Dandekar T - Search Results

1

Lipid-Pro: a computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms.

Ahmed Z, Mayr M, Zeeshan S, Dandekar T, Mueller MJ, Fekete A. Ahmed Z, et al. Among authors: dandekar t. Bioinformatics. 2015 Apr 1;31(7):1150-3. doi: 10.1093/bioinformatics/btu796. Epub 2014 Nov 29. Bioinformatics. 2015. PMID: 25433698

2

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances.

Friedrich J, Dandekar T, Wolf M, Müller T. Friedrich J, et al. Among authors: dandekar t. Bioinformatics. 2005 May 1;21(9):2108-9. doi: 10.1093/bioinformatics/bti289. Epub 2005 Jan 27. Bioinformatics. 2005. PMID: 15677706

3

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.

Schwarz R, Musch P, von Kamp A, Engels B, Schirmer H, Schuster S, Dandekar T. Schwarz R, et al. Among authors: dandekar t. BMC Bioinformatics. 2005 Jun 1;6:135. doi: 10.1186/1471-2105-6-135. BMC Bioinformatics. 2005. PMID: 15929789 Free PMC article.

4

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.

Seibel PN, Müller T, Dandekar T, Schultz J, Wolf M. Seibel PN, et al. Among authors: dandekar t. BMC Bioinformatics. 2006 Nov 13;7:498. doi: 10.1186/1471-2105-7-498. BMC Bioinformatics. 2006. PMID: 17101042 Free PMC article.

5

An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach.

Deeken R, Engelmann JC, Efetova M, Czirjak T, Müller T, Kaiser WM, Tietz O, Krischke M, Mueller MJ, Palme K, Dandekar T, Hedrich R. Deeken R, et al. Among authors: dandekar t. Plant Cell. 2006 Dec;18(12):3617-34. doi: 10.1105/tpc.106.044743. Epub 2006 Dec 15. Plant Cell. 2006. PMID: 17172353 Free PMC article.

6

Identifying functional modules in protein-protein interaction networks: an integrated exact approach.

Dittrich MT, Klau GW, Rosenwald A, Dandekar T, Müller T. Dittrich MT, et al. Among authors: dandekar t. Bioinformatics. 2008 Jul 1;24(13):i223-31. doi: 10.1093/bioinformatics/btn161. Bioinformatics. 2008. PMID: 18586718 Free PMC article.

7

ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments.

Wolf M, Ruderisch B, Dandekar T, Schultz J, Müller T. Wolf M, et al. Among authors: dandekar t. Bioinformatics. 2008 Oct 15;24(20):2401-2. doi: 10.1093/bioinformatics/btn453. Epub 2008 Aug 21. Bioinformatics. 2008. PMID: 18723521

8

JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes.

Liang C, Schmid A, López-Sánchez MJ, Moya A, Gross R, Bernhardt J, Dandekar T. Liang C, et al. Among authors: dandekar t. BMC Bioinformatics. 2009 Nov 29;10:391. doi: 10.1186/1471-2105-10-391. BMC Bioinformatics. 2009. PMID: 19943962 Free PMC article.

9

BioNet: an R-Package for the functional analysis of biological networks.

Beisser D, Klau GW, Dandekar T, Müller T, Dittrich MT. Beisser D, et al. Among authors: dandekar t. Bioinformatics. 2010 Apr 15;26(8):1129-30. doi: 10.1093/bioinformatics/btq089. Epub 2010 Feb 25. Bioinformatics. 2010. PMID: 20189939

10

Robustness and accuracy of functional modules in integrated network analysis.

Beisser D, Brunkhorst S, Dandekar T, Klau GW, Dittrich MT, Müller T. Beisser D, et al. Among authors: dandekar t. Bioinformatics. 2012 Jul 15;28(14):1887-94. doi: 10.1093/bioinformatics/bts265. Epub 2012 May 11. Bioinformatics. 2012. PMID: 22581175

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