Thys K - Search Results

1

Performance assessment of the Illumina massively parallel sequencing platform for deep sequencing analysis of viral minority variants.

Thys K, Verhasselt P, Reumers J, Verbist BM, Maes B, Aerssens J. Thys K, et al. J Virol Methods. 2015 Sep 1;221:29-38. doi: 10.1016/j.jviromet.2015.04.022. Epub 2015 Apr 25. J Virol Methods. 2015. PMID: 25917877

2

HIV-1 nucleotide mixture detection in the virco(®)TYPE HIV-1 genotyping assay: a comparison between Sanger sequencing and 454 pyrosequencing.

De Wolf H, Van Marck H, Mostmans W, Thys K, Vandenbroucke I, Van Eygen V, Pattery T, Verhasselt P, Aerssens J. De Wolf H, et al. Among authors: thys k. J Virol Methods. 2011 Jul;175(1):129-32. doi: 10.1016/j.jviromet.2011.04.023. Epub 2011 Apr 27. J Virol Methods. 2011. PMID: 21549149

3

Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications.

Vandenbroucke I, Van Marck H, Verhasselt P, Thys K, Mostmans W, Dumont S, Van Eygen V, Coen K, Tuefferd M, Aerssens J. Vandenbroucke I, et al. Among authors: thys k. Biotechniques. 2011 Sep;51(3):167-77. doi: 10.2144/000113733. Biotechniques. 2011. PMID: 21906038 Free article.

4

Ultra-deep sequencing of HIV-1 reverse transcriptase before start of an NNRTI-based regimen in treatment-naive patients.

Messiaen P, Verhofstede C, Vandenbroucke I, Dinakis S, Van Eygen V, Thys K, Winters B, Aerssens J, Vogelaers D, Stuyver LJ, Vandekerckhove L. Messiaen P, et al. Among authors: thys k. Virology. 2012 Apr 25;426(1):7-11. doi: 10.1016/j.virol.2012.01.002. Epub 2012 Feb 4. Virology. 2012. PMID: 22305619 Free article.

5

IgG variable region and VH CDR3 diversity in unimmunized mice analyzed by massively parallel sequencing.

Lu J, Panavas T, Thys K, Aerssens J, Naso M, Fisher J, Rycyzyn M, Sweet RW. Lu J, et al. Among authors: thys k. Mol Immunol. 2014 Feb;57(2):274-83. doi: 10.1016/j.molimm.2013.09.008. Epub 2013 Nov 8. Mol Immunol. 2014. PMID: 24211535

6

Efficiency of whole genome amplification of single circulating tumor cells enriched by CellSearch and sorted by FACS.

Swennenhuis JF, Reumers J, Thys K, Aerssens J, Terstappen LW. Swennenhuis JF, et al. Among authors: thys k. Genome Med. 2013 Nov 29;5(11):106. doi: 10.1186/gm510. eCollection 2013. Genome Med. 2013. PMID: 24286536 Free PMC article.

7

A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolates.

Sijmons S, Thys K, Corthout M, Van Damme E, Van Loock M, Bollen S, Baguet S, Aerssens J, Van Ranst M, Maes P. Sijmons S, et al. Among authors: thys k. PLoS One. 2014 Apr 22;9(4):e95501. doi: 10.1371/journal.pone.0095501. eCollection 2014. PLoS One. 2014. PMID: 24755734 Free PMC article.

8

Deep-sequencing analysis of the gene encoding the hepatitis C virus nonstructural 3-4A protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the REALIZE study.

Dierynck I, Thys K, Ghys A, Sullivan JC, Kieffer TL, Aerssens J, Picchio G, De Meyer S. Dierynck I, et al. Among authors: thys k. J Infect Dis. 2014 Dec 15;210(12):1871-80. doi: 10.1093/infdis/jiu340. Epub 2014 Jun 18. J Infect Dis. 2014. PMID: 24943725 Clinical Trial.

9

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering.

Verbist BM, Thys K, Reumers J, Wetzels Y, Van der Borght K, Talloen W, Aerssens J, Clement L, Thas O. Verbist BM, et al. Among authors: thys k. Bioinformatics. 2015 Jan 1;31(1):94-101. doi: 10.1093/bioinformatics/btu587. Epub 2014 Aug 31. Bioinformatics. 2015. PMID: 25178459

10

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering.

Verbist B, Clement L, Reumers J, Thys K, Vapirev A, Talloen W, Wetzels Y, Meys J, Aerssens J, Bijnens L, Thas O. Verbist B, et al. Among authors: thys k. BMC Bioinformatics. 2015 Feb 22;16:59. doi: 10.1186/s12859-015-0458-7. BMC Bioinformatics. 2015. PMID: 25887734 Free PMC article.

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