Simmonds TJ - Search Results

1

Microplitis demolitor Bracovirus Proviral Loci and Clustered Replication Genes Exhibit Distinct DNA Amplification Patterns during Replication.

Burke GR, Simmonds TJ, Thomas SA, Strand MR. Burke GR, et al. Among authors: simmonds tj. J Virol. 2015 Sep;89(18):9511-23. doi: 10.1128/JVI.01388-15. Epub 2015 Jul 8. J Virol. 2015. PMID: 26157119 Free PMC article.

2

Characterization of a venom gland-associated rhabdovirus in the parasitoid wasp Diachasmimorpha longicaudata.

Simmonds TJ, Carrillo D, Burke GR. Simmonds TJ, et al. J Insect Physiol. 2016 Aug-Sep;91-92:48-55. doi: 10.1016/j.jinsphys.2016.06.009. Epub 2016 Jun 29. J Insect Physiol. 2016. PMID: 27374981

3

Rapid Viral Symbiogenesis via Changes in Parasitoid Wasp Genome Architecture.

Burke GR, Simmonds TJ, Sharanowski BJ, Geib SM. Burke GR, et al. Among authors: simmonds tj. Mol Biol Evol. 2018 Oct 1;35(10):2463-2474. doi: 10.1093/molbev/msy148. Mol Biol Evol. 2018. PMID: 30053110

4

A chromosome scale assembly of the parasitoid wasp Venturia canescens provides insight into the process of virus domestication.

Mao M, Simmonds TJ, Stouthamer CM, Kehoe TM, Geib SM, Burke GR. Mao M, et al. Among authors: simmonds tj. G3 (Bethesda). 2023 Sep 30;13(10):jkad137. doi: 10.1093/g3journal/jkad137. G3 (Bethesda). 2023. PMID: 37345948 Free PMC article.

5

The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research.

Childers AK, Geib SM, Sim SB, Poelchau MF, Coates BS, Simmonds TJ, Scully ED, Smith TPL, Childers CP, Corpuz RL, Hackett K, Scheffler B. Childers AK, et al. Among authors: simmonds tj. Insects. 2021 Jul 9;12(7):626. doi: 10.3390/insects12070626. Insects. 2021. PMID: 34357286 Free PMC article.

6

HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.

Sim SB, Corpuz RL, Simmonds TJ, Geib SM. Sim SB, et al. Among authors: simmonds tj. BMC Genomics. 2022 Feb 22;23(1):157. doi: 10.1186/s12864-022-08375-1. BMC Genomics. 2022. PMID: 35193521 Free PMC article.

7

A Unified Protocol for CRISPR/Cas9-Mediated Gene Knockout in Tephritid Fruit Flies Led to the Recreation of White Eye and White Puparium Phenotypes in the Melon Fly.

Paulo DF, Cha AY, Kauwe AN, Curbelo K, Corpuz RL, Simmonds TJ, Sim SB, Geib SM. Paulo DF, et al. Among authors: simmonds tj. J Econ Entomol. 2022 Dec 14;115(6):2110-2115. doi: 10.1093/jee/toac166. J Econ Entomol. 2022. PMID: 36263914

8

Niche Conservatism for Ecological Preference in the Louisiana iris species complex.

Hamlin JAP, Simmonds TJ, Arnold ML. Hamlin JAP, et al. Among authors: simmonds tj. Biol J Linn Soc Lond. 2017 Jan;120(1):144-154. doi: 10.1111/bij.12884. Epub 2016 Sep 19. Biol J Linn Soc Lond. 2017. PMID: 32742021 Free PMC article.

9

Chromosome-scale genome of the polyphagous pest Anastrepha ludens (Diptera: Tephritidae) provides insights on sex chromosome evolution in Anastrepha.

Congrains C, Sim SB, Paulo DF, Corpuz RL, Kauwe AN, Simmonds TJ, Simpson SA, Scheffler BE, Geib SM. Congrains C, et al. Among authors: simmonds tj. G3 (Bethesda). 2024 Oct 4:jkae239. doi: 10.1093/g3journal/jkae239. Online ahead of print. G3 (Bethesda). 2024. PMID: 39365162

10

otb: an automated HiC/HiFi pipeline assembles the Prosapia bicincta Genome.

Molik DC, Stahlke AR, Sharma SP, Simmonds TJ, Corpuz RL, Kauwe AN, Schrader JE, Mason CJ, Sim SB, Geib SM. Molik DC, et al. Among authors: simmonds tj. G3 (Bethesda). 2024 Aug 7;14(8):jkae129. doi: 10.1093/g3journal/jkae129. G3 (Bethesda). 2024. PMID: 38861413 Free PMC article.

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