Skolnick J - Search Results

1

PoLi: A Virtual Screening Pipeline Based on Template Pocket and Ligand Similarity.

Roy A, Srinivasan B, Skolnick J. Roy A, et al. Among authors: skolnick j. J Chem Inf Model. 2015 Aug 24;55(8):1757-70. doi: 10.1021/acs.jcim.5b00232. Epub 2015 Aug 12. J Chem Inf Model. 2015. PMID: 26225536 Free PMC article.

2

Benchmarking of TASSER in the ab initio limit.

Borreguero JM, Skolnick J. Borreguero JM, et al. Among authors: skolnick j. Proteins. 2007 Jul 1;68(1):48-56. doi: 10.1002/prot.21392. Proteins. 2007. PMID: 17444524

3

What is the relationship between the global structures of apo and holo proteins?

Brylinski M, Skolnick J. Brylinski M, et al. Among authors: skolnick j. Proteins. 2008 Feb 1;70(2):363-77. doi: 10.1002/prot.21510. Proteins. 2008. PMID: 17680687

4

M-TASSER: an algorithm for protein quaternary structure prediction.

Chen H, Skolnick J. Chen H, et al. Among authors: skolnick j. Biophys J. 2008 Feb 1;94(3):918-28. doi: 10.1529/biophysj.107.114280. Epub 2007 Sep 28. Biophys J. 2008. PMID: 17905848 Free PMC article.

5

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation.

Brylinski M, Skolnick J. Brylinski M, et al. Among authors: skolnick j. Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):129-34. doi: 10.1073/pnas.0707684105. Epub 2007 Dec 28. Proc Natl Acad Sci U S A. 2008. PMID: 18165317 Free PMC article.

6

Assessment of programs for ligand binding affinity prediction.

Kim R, Skolnick J. Kim R, et al. Among authors: skolnick j. J Comput Chem. 2008 Jun;29(8):1316-31. doi: 10.1002/jcc.20893. J Comput Chem. 2008. PMID: 18172838 Free PMC article.

7

Development of a physics-based force field for the scoring and refinement of protein models.

Wroblewska L, Jagielska A, Skolnick J. Wroblewska L, et al. Among authors: skolnick j. Biophys J. 2008 Apr 15;94(8):3227-40. doi: 10.1529/biophysj.107.121947. Epub 2008 Jan 4. Biophys J. 2008. PMID: 18178653 Free PMC article.

8

Q-Dock: Low-resolution flexible ligand docking with pocket-specific threading restraints.

Brylinski M, Skolnick J. Brylinski M, et al. Among authors: skolnick j. J Comput Chem. 2008 Jul 30;29(10):1574-88. doi: 10.1002/jcc.20917. J Comput Chem. 2008. PMID: 18293308 Free PMC article.

9

Benchmarking of TASSER_2.0: an improved protein structure prediction algorithm with more accurate predicted contact restraints.

Lee SY, Skolnick J. Lee SY, et al. Among authors: skolnick j. Biophys J. 2008 Aug;95(4):1956-64. doi: 10.1529/biophysj.108.129759. Epub 2008 May 16. Biophys J. 2008. PMID: 18487301 Free PMC article.

10

DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions.

Gao M, Skolnick J. Gao M, et al. Among authors: skolnick j. Nucleic Acids Res. 2008 Jul;36(12):3978-92. doi: 10.1093/nar/gkn332. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515839 Free PMC article.

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