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RiboAbacus: a model trained on polyribosome images predicts ribosome density and translational efficiency from mammalian transcriptomes.
Lauria F, Tebaldi T, Lunelli L, Struffi P, Gatto P, Pugliese A, Brigotti M, Montanaro L, Ciribilli Y, Inga A, Quattrone A, Sanguinetti G, Viero G. Lauria F, et al. Among authors: sanguinetti g. Nucleic Acids Res. 2015 Dec 15;43(22):e153. doi: 10.1093/nar/gkv781. Epub 2015 Aug 3. Nucleic Acids Res. 2015. PMID: 26240374 Free PMC article.
HuD Is a Neural Translation Enhancer Acting on mTORC1-Responsive Genes and Counteracted by the Y3 Small Non-coding RNA.
Tebaldi T, Zuccotti P, Peroni D, Köhn M, Gasperini L, Potrich V, Bonazza V, Dudnakova T, Rossi A, Sanguinetti G, Conti L, Macchi P, D'Agostino V, Viero G, Tollervey D, Hüttelmaier S, Quattrone A. Tebaldi T, et al. Among authors: sanguinetti g. Mol Cell. 2018 Jul 19;71(2):256-270.e10. doi: 10.1016/j.molcel.2018.06.032. Mol Cell. 2018. PMID: 30029004 Free PMC article.
Reconstructing transcription factor activities in hierarchical transcription network motifs.
Ocone A, Sanguinetti G. Ocone A, et al. Among authors: sanguinetti g. Bioinformatics. 2011 Oct 15;27(20):2873-9. doi: 10.1093/bioinformatics/btr487. Epub 2011 Sep 7. Bioinformatics. 2011. PMID: 21903631
AVAILABILITY: http://homepages.inf.ed.ac.uk/gsanguin/software.html CONTACT: g.sanguinetti@ed.ac.uk SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
AVAILABILITY: http://homepages.inf.ed.ac.uk/gsanguin/software.html CONTACT: g.sanguinetti@ed.ac.uk SUPPLEMENTARY INFORMATION: …
Point process modelling of the Afghan War Diary.
Zammit-Mangion A, Dewar M, Kadirkamanathan V, Sanguinetti G. Zammit-Mangion A, et al. Among authors: sanguinetti g. Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12414-9. doi: 10.1073/pnas.1203177109. Epub 2012 Jul 16. Proc Natl Acad Sci U S A. 2012. PMID: 22802667 Free PMC article.
Statistical modeling of isoform splicing dynamics from RNA-seq time series data.
Huang Y, Sanguinetti G. Huang Y, et al. Among authors: sanguinetti g. Bioinformatics. 2016 Oct 1;32(19):2965-72. doi: 10.1093/bioinformatics/btw364. Epub 2016 Jun 17. Bioinformatics. 2016. PMID: 27318208
AVAILABILITY AND IMPLEMENTATION: Python code is freely available at http://diceseq.sf.net CONTACT: G.Sanguinetti@ed.ac.uk SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
AVAILABILITY AND IMPLEMENTATION: Python code is freely available at http://diceseq.sf.net CONTACT: G.Sanguinetti@ed.ac.uk SUPP …
133 results