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Diversified microbiota of meconium is affected by maternal diabetes status.
Hu J, Nomura Y, Bashir A, Fernandez-Hernandez H, Itzkowitz S, Pei Z, Stone J, Loudon H, Peter I. Hu J, et al. Among authors: bashir a. PLoS One. 2013 Nov 6;8(11):e78257. doi: 10.1371/journal.pone.0078257. eCollection 2013. PLoS One. 2013. PMID: 24223144 Free PMC article.
Assembly and diploid architecture of an individual human genome via single-molecule technologies.
Pendleton M, Sebra R, Pang AW, Ummat A, Franzen O, Rausch T, Stütz AM, Stedman W, Anantharaman T, Hastie A, Dai H, Fritz MH, Cao H, Cohain A, Deikus G, Durrett RE, Blanchard SC, Altman R, Chin CS, Guo Y, Paxinos EE, Korbel JO, Darnell RB, McCombie WR, Kwok PY, Mason CE, Schadt EE, Bashir A. Pendleton M, et al. Among authors: bashir a. Nat Methods. 2015 Aug;12(8):780-6. doi: 10.1038/nmeth.3454. Epub 2015 Jun 29. Nat Methods. 2015. PMID: 26121404 Free PMC article.
Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.
Sevim V, Bashir A, Chin CS, Miga KH. Sevim V, et al. Among authors: bashir a. Bioinformatics. 2016 Jul 1;32(13):1921-1924. doi: 10.1093/bioinformatics/btw101. Epub 2016 Feb 24. Bioinformatics. 2016. PMID: 27153570 Free PMC article.
MOTIVATION: Long arrays of near-identical tandem repeats are a common feature of centromeric and subtelomeric regions in complex genomes. These sequences present a source of repeat structure diversity that is commonly ignored by standard genomic tools. ...Alpha-CENT …
MOTIVATION: Long arrays of near-identical tandem repeats are a common feature of centromeric and subtelomeric regions in complex geno …
Resolving complex tandem repeats with long reads.
Ummat A, Bashir A. Ummat A, et al. Among authors: bashir a. Bioinformatics. 2014 Dec 15;30(24):3491-8. doi: 10.1093/bioinformatics/btu437. Epub 2014 Jul 15. Bioinformatics. 2014. PMID: 25028725
902 results