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Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.
Aanensen DM, Feil EJ, Holden MT, Dordel J, Yeats CA, Fedosejev A, Goater R, Castillo-Ramírez S, Corander J, Colijn C, Chlebowicz MA, Schouls L, Heck M, Pluister G, Ruimy R, Kahlmeter G, Åhman J, Matuschek E, Friedrich AW, Parkhill J, Bentley SD, Spratt BG, Grundmann H; European SRL Working Group. Aanensen DM, et al. Among authors: colijn c. mBio. 2016 May 5;7(3):e00444-16. doi: 10.1128/mBio.00444-16. mBio. 2016. PMID: 27150362 Free PMC article.
OutbreakTools: a new platform for disease outbreak analysis using the R software.
Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N. Jombart T, et al. Among authors: colijn c. Epidemics. 2014 Jun;7(100):28-34. doi: 10.1016/j.epidem.2014.04.003. Epub 2014 Apr 18. Epidemics. 2014. PMID: 24928667 Free PMC article.
Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru.
Grandjean L, Gilman RH, Iwamoto T, Köser CU, Coronel J, Zimic M, Török ME, Ayabina D, Kendall M, Fraser C, Harris S, Parkhill J, Peacock SJ, Moore DAJ, Colijn C. Grandjean L, et al. Among authors: colijn c. PLoS One. 2017 Dec 27;12(12):e0189838. doi: 10.1371/journal.pone.0189838. eCollection 2017. PLoS One. 2017. PMID: 29281674 Free PMC article.
Deep clustering of bacterial tree images.
Hayati M, Chindelevitch L, Aanensen D, Colijn C. Hayati M, et al. Among authors: colijn c. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210231. doi: 10.1098/rstb.2021.0231. Epub 2022 Aug 22. Philos Trans R Soc Lond B Biol Sci. 2022. PMID: 35989604 Free PMC article.
146 results