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Whole-Genome Sequencing to Evaluate the Resistance Landscape Following Antimalarial Treatment Failure With Fosmidomycin-Clindamycin.
Guggisberg AM, Sundararaman SA, Lanaspa M, Moraleda C, González R, Mayor A, Cisteró P, Hutchinson D, Kremsner PG, Hahn BH, Bassat Q, Odom AR. Guggisberg AM, et al. Among authors: sundararaman sa. J Infect Dis. 2016 Oct 1;214(7):1085-91. doi: 10.1093/infdis/jiw304. Epub 2016 Jul 20. J Infect Dis. 2016. PMID: 27443612 Free PMC article.
Plasmodium falciparum-like parasites infecting wild apes in southern Cameroon do not represent a recurrent source of human malaria.
Sundararaman SA, Liu W, Keele BF, Learn GH, Bittinger K, Mouacha F, Ahuka-Mundeke S, Manske M, Sherrill-Mix S, Li Y, Malenke JA, Delaporte E, Laurent C, Mpoudi Ngole E, Kwiatkowski DP, Shaw GM, Rayner JC, Peeters M, Sharp PM, Bushman FD, Hahn BH. Sundararaman SA, et al. Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):7020-5. doi: 10.1073/pnas.1305201110. Epub 2013 Apr 8. Proc Natl Acad Sci U S A. 2013. PMID: 23569255 Free PMC article.
African origin of the malaria parasite Plasmodium vivax.
Liu W, Li Y, Shaw KS, Learn GH, Plenderleith LJ, Malenke JA, Sundararaman SA, Ramirez MA, Crystal PA, Smith AG, Bibollet-Ruche F, Ayouba A, Locatelli S, Esteban A, Mouacha F, Guichet E, Butel C, Ahuka-Mundeke S, Inogwabini BI, Ndjango JB, Speede S, Sanz CM, Morgan DB, Gonder MK, Kranzusch PJ, Walsh PD, Georgiev AV, Muller MN, Piel AK, Stewart FA, Wilson ML, Pusey AE, Cui L, Wang Z, Färnert A, Sutherland CJ, Nolder D, Hart JA, Hart TB, Bertolani P, Gillis A, LeBreton M, Tafon B, Kiyang J, Djoko CF, Schneider BS, Wolfe ND, Mpoudi-Ngole E, Delaporte E, Carter R, Culleton RL, Shaw GM, Rayner JC, Peeters M, Hahn BH, Sharp PM. Liu W, et al. Among authors: sundararaman sa. Nat Commun. 2014;5:3346. doi: 10.1038/ncomms4346. Nat Commun. 2014. PMID: 24557500 Free PMC article.
Ape parasite origins of human malaria virulence genes.
Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO. Larremore DB, et al. Among authors: sundararaman sa. Nat Commun. 2015 Oct 12;6:8368. doi: 10.1038/ncomms9368. Nat Commun. 2015. PMID: 26456841 Free PMC article.
Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples.
Cowell AN, Loy DE, Sundararaman SA, Valdivia H, Fisch K, Lescano AG, Baldeviano GC, Durand S, Gerbasi V, Sutherland CJ, Nolder D, Vinetz JM, Hahn BH, Winzeler EA. Cowell AN, et al. Among authors: sundararaman sa. mBio. 2017 Feb 7;8(1):e02257-16. doi: 10.1128/mBio.02257-16. mBio. 2017. PMID: 28174312 Free PMC article.
swga: a primer design toolkit for selective whole genome amplification.
Clarke EL, Sundararaman SA, Seifert SN, Bushman FD, Hahn BH, Brisson D. Clarke EL, et al. Among authors: sundararaman sa. Bioinformatics. 2017 Jul 15;33(14):2071-2077. doi: 10.1093/bioinformatics/btx118. Bioinformatics. 2017. PMID: 28334194 Free PMC article.
Wild bonobos host geographically restricted malaria parasites including a putative new Laverania species.
Liu W, Sherrill-Mix S, Learn GH, Scully EJ, Li Y, Avitto AN, Loy DE, Lauder AP, Sundararaman SA, Plenderleith LJ, Ndjango JN, Georgiev AV, Ahuka-Mundeke S, Peeters M, Bertolani P, Dupain J, Garai C, Hart JA, Hart TB, Shaw GM, Sharp PM, Hahn BH. Liu W, et al. Among authors: sundararaman sa. Nat Commun. 2017 Nov 21;8(1):1635. doi: 10.1038/s41467-017-01798-5. Nat Commun. 2017. PMID: 29158512 Free PMC article.
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