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Page 1
Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging.
Amaral RSC, Park MTM, Devenyi GA, Lynn V, Pipitone J, Winterburn J, Chavez S, Schira M, Lobaugh NJ, Voineskos AN, Pruessner JC, Chakravarty MM; Alzheimer’s Disease Neuroimaging Initiative. Amaral RSC, et al. Neuroimage. 2018 Apr 15;170:132-150. doi: 10.1016/j.neuroimage.2016.10.027. Epub 2016 Oct 18. Neuroimage. 2018. PMID: 27765611
Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: towards a harmonized segmentation protocol.
Yushkevich PA, Amaral RS, Augustinack JC, Bender AR, Bernstein JD, Boccardi M, Bocchetta M, Burggren AC, Carr VA, Chakravarty MM, Chételat G, Daugherty AM, Davachi L, Ding SL, Ekstrom A, Geerlings MI, Hassan A, Huang Y, Iglesias JE, La Joie R, Kerchner GA, LaRocque KF, Libby LA, Malykhin N, Mueller SG, Olsen RK, Palombo DJ, Parekh MB, Pluta JB, Preston AR, Pruessner JC, Ranganath C, Raz N, Schlichting ML, Schoemaker D, Singh S, Stark CE, Suthana N, Tompary A, Turowski MM, Van Leemput K, Wagner AD, Wang L, Winterburn JL, Wisse LE, Yassa MA, Zeineh MM; Hippocampal Subfields Group (HSG). Yushkevich PA, et al. Neuroimage. 2015 May 1;111:526-41. doi: 10.1016/j.neuroimage.2015.01.004. Epub 2015 Jan 14. Neuroimage. 2015. PMID: 25596463 Free PMC article.
A harmonized segmentation protocol for hippocampal and parahippocampal subregions: Why do we need one and what are the key goals?
Wisse LEM, Daugherty AM, Olsen RK, Berron D, Carr VA, Stark CEL, Amaral RSC, Amunts K, Augustinack JC, Bender AR, Bernstein JD, Boccardi M, Bocchetta M, Burggren A, Chakravarty MM, Chupin M, Ekstrom A, de Flores R, Insausti R, Kanel P, Kedo O, Kennedy KM, Kerchner GA, LaRocque KF, Liu X, Maass A, Malykhin N, Mueller SG, Ofen N, Palombo DJ, Parekh MB, Pluta JB, Pruessner JC, Raz N, Rodrigue KM, Schoemaker D, Shafer AT, Steve TA, Suthana N, Wang L, Winterburn JL, Yassa MA, Yushkevich PA, la Joie R; Hippocampal Subfields Group. Wisse LEM, et al. Among authors: amaral rsc. Hippocampus. 2017 Jan;27(1):3-11. doi: 10.1002/hipo.22671. Epub 2016 Nov 15. Hippocampus. 2017. PMID: 27862600 Free PMC article.
Regionally specific changes in the hippocampal circuitry accompany progression of cerebrospinal fluid biomarkers in preclinical Alzheimer's disease.
Tardif CL, Devenyi GA, Amaral RSC, Pelleieux S, Poirier J, Rosa-Neto P, Breitner J, Chakravarty MM; PREVENT-AD Research Group. Tardif CL, et al. Among authors: amaral rsc. Hum Brain Mapp. 2018 Feb;39(2):971-984. doi: 10.1002/hbm.23897. Epub 2017 Nov 21. Hum Brain Mapp. 2018. PMID: 29164798 Free PMC article. Clinical Trial.
Progress update from the hippocampal subfields group.
Olsen RK, Carr VA, Daugherty AM, La Joie R, Amaral RSC, Amunts K, Augustinack JC, Bakker A, Bender AR, Berron D, Boccardi M, Bocchetta M, Burggren AC, Chakravarty MM, Chételat G, de Flores R, DeKraker J, Ding SL, Geerlings MI, Huang Y, Insausti R, Johnson EG, Kanel P, Kedo O, Kennedy KM, Keresztes A, Lee JK, Lindenberger U, Mueller SG, Mulligan EM, Ofen N, Palombo DJ, Pasquini L, Pluta J, Raz N, Rodrigue KM, Schlichting ML, Lee Shing Y, Stark CEL, Steve TA, Suthana NA, Wang L, Werkle-Bergner M, Yushkevich PA, Yu Q, Wisse LEM; Hippocampal Subfields Group. Olsen RK, et al. Among authors: amaral rsc. Alzheimers Dement (Amst). 2019 Jun 13;11:439-449. doi: 10.1016/j.dadm.2019.04.001. eCollection 2019 Dec. Alzheimers Dement (Amst). 2019. PMID: 31245529 Free PMC article.
Fornix-Region Deep Brain Stimulation-Induced Memory Flashbacks in Alzheimer's Disease.
Deeb W, Salvato B, Almeida L, Foote KD, Amaral R, Germann J, Rosenberg PB, Tang-Wai DF, Wolk DA, Burke AD, Salloway S, Sabbagh MN, Chakravarty MM, Smith GS, Lyketsos CG, Lozano AM, Okun MS. Deeb W, et al. N Engl J Med. 2019 Aug 22;381(8):783-785. doi: 10.1056/NEJMc1905240. N Engl J Med. 2019. PMID: 31433930 Free PMC article. Clinical Trial. No abstract available.
Optimal deep brain stimulation sites and networks for stimulation of the fornix in Alzheimer's disease.
Ríos AS, Oxenford S, Neudorfer C, Butenko K, Li N, Rajamani N, Boutet A, Elias GJB, Germann J, Loh A, Deeb W, Wang F, Setsompop K, Salvato B, Almeida LB, Foote KD, Amaral R, Rosenberg PB, Tang-Wai DF, Wolk DA, Burke AD, Salloway S, Sabbagh MN, Chakravarty MM, Smith GS, Lyketsos CG, Okun MS, Anderson WS, Mari Z, Ponce FA, Lozano AM, Horn A. Ríos AS, et al. Nat Commun. 2022 Dec 14;13(1):7707. doi: 10.1038/s41467-022-34510-3. Nat Commun. 2022. PMID: 36517479 Free PMC article.
WarpDrive: Improving spatial normalization using manual refinements.
Oxenford S, Ríos AS, Hollunder B, Neudorfer C, Boutet A, Elias GJB, Germann J, Loh A, Deeb W, Salvato B, Almeida L, Foote KD, Amaral R, Rosenberg PB, Tang-Wai DF, Wolk DA, Burke AD, Sabbagh MN, Salloway S, Chakravarty MM, Smith GS, Lyketsos CG, Okun MS, Anderson WS, Mari Z, Ponce FA, Lozano A, Neumann WJ, Al-Fatly B, Horn A. Oxenford S, et al. Med Image Anal. 2024 Jan;91:103041. doi: 10.1016/j.media.2023.103041. Epub 2023 Nov 19. Med Image Anal. 2024. PMID: 38007978 Free article.
13 results