Shakhnovich E - Search Results

1

Exploring the Mutational Robustness of Nucleic Acids by Searching Genotype Neighborhoods in Sequence Space.

Zhou Q, Sun X, Xia X, Fan Z, Luo Z, Zhao S, Shakhnovich E, Liang H. Zhou Q, et al. Among authors: shakhnovich e. J Phys Chem Lett. 2017 Jan 19;8(2):407-414. doi: 10.1021/acs.jpclett.6b02769. Epub 2017 Jan 5. J Phys Chem Lett. 2017. PMID: 28045264

2

Searching the Sequence Space for Potent Aptamers Using SELEX in Silico.

Zhou Q, Xia X, Luo Z, Liang H, Shakhnovich E. Zhou Q, et al. Among authors: shakhnovich e. J Chem Theory Comput. 2015 Dec 8;11(12):5939-46. doi: 10.1021/acs.jctc.5b00707. Epub 2015 Nov 5. J Chem Theory Comput. 2015. PMID: 26642994

3

Accurate Protein-Folding Transition-Path Statistics from a Simple Free-Energy Landscape.

Jacobs WM, Shakhnovich EI. Jacobs WM, et al. J Phys Chem B. 2018 Dec 13;122(49):11126-11136. doi: 10.1021/acs.jpcb.8b05842. Epub 2018 Aug 22. J Phys Chem B. 2018. PMID: 30091592 Free PMC article.

4

Common activation mechanism of class A GPCRs.

Zhou Q, Yang D, Wu M, Guo Y, Guo W, Zhong L, Cai X, Dai A, Jang W, Shakhnovich EI, Liu ZJ, Stevens RC, Lambert NA, Babu MM, Wang MW, Zhao S. Zhou Q, et al. Elife. 2019 Dec 19;8:e50279. doi: 10.7554/eLife.50279. Elife. 2019. PMID: 31855179 Free PMC article.

5

Structural determinant of protein designability.

England JL, Shakhnovich EI. England JL, et al. Phys Rev Lett. 2003 May 30;90(21):218101. doi: 10.1103/PhysRevLett.90.218101. Epub 2003 May 29. Phys Rev Lett. 2003. PMID: 12786593

6

Statistically enhanced self-attraction of random patterns.

Lukatsky DB, Zeldovich KB, Shakhnovich EI. Lukatsky DB, et al. Among authors: shakhnovich ei. Phys Rev Lett. 2006 Oct 27;97(17):178101. doi: 10.1103/PhysRevLett.97.178101. Epub 2006 Oct 25. Phys Rev Lett. 2006. PMID: 17155509

7

Understanding protein evolution: from protein physics to Darwinian selection.

Zeldovich KB, Shakhnovich EI. Zeldovich KB, et al. Annu Rev Phys Chem. 2008;59:105-27. doi: 10.1146/annurev.physchem.58.032806.104449. Annu Rev Phys Chem. 2008. PMID: 17937598 Review.

8

Slowly replicating lytic viruses: pseudolysogenic persistence and within-host competition.

Zhang J, Shakhnovich EI. Zhang J, et al. Phys Rev Lett. 2009 May 1;102(17):178103. doi: 10.1103/PhysRevLett.102.178103. Epub 2009 May 1. Phys Rev Lett. 2009. PMID: 19518838

9

Thymic selection of T-cell receptors as an extreme value problem.

Kosmrlj A, Chakraborty AK, Kardar M, Shakhnovich EI. Kosmrlj A, et al. Phys Rev Lett. 2009 Aug 7;103(6):068103. doi: 10.1103/PhysRevLett.103.068103. Epub 2009 Aug 7. Phys Rev Lett. 2009. PMID: 19792616

10

Graph's Topology and Free Energy of a Spin Model on the Graph.

Choi JM, Gilson AI, Shakhnovich EI. Choi JM, et al. Phys Rev Lett. 2017 Feb 24;118(8):088302. doi: 10.1103/PhysRevLett.118.088302. Epub 2017 Feb 24. Phys Rev Lett. 2017. PMID: 28282198 Free PMC article.

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