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The effective rate of influenza reassortment is limited during human infection.
Sobel Leonard A, McClain MT, Smith GJ, Wentworth DE, Halpin RA, Lin X, Ransier A, Stockwell TB, Das SR, Gilbert AS, Lambkin-Williams R, Ginsburg GS, Woods CW, Koelle K, Illingworth CJ. Sobel Leonard A, et al. Among authors: lin x. PLoS Pathog. 2017 Feb 7;13(2):e1006203. doi: 10.1371/journal.ppat.1006203. eCollection 2017 Feb. PLoS Pathog. 2017. PMID: 28170438 Free PMC article.
The early diversification of influenza A/H1N1pdm.
Nelson M, Spiro D, Wentworth D, Beck E, Fan J, Ghedin E, Halpin R, Bera J, Hine E, Proudfoot K, Stockwell T, Lin X, Griesemer S, Kumar S, Bose M, Viboud C, Holmes E, Henrickson K. Nelson M, et al. Among authors: lin x. PLoS Curr. 2009 Nov 3;1:RRN1126. doi: 10.1371/currents.rrn1126. PLoS Curr. 2009. PMID: 20029664 Free PMC article.
Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic.
Ghedin E, Wentworth DE, Halpin RA, Lin X, Bera J, DePasse J, Fitch A, Griesemer S, Hine E, Katzel DA, Overton L, Proudfoot K, Sitz J, Szczypinski B, StGeorge K, Spiro DJ, Holmes EC. Ghedin E, et al. Among authors: lin x. J Virol. 2010 Jun;84(11):5715-8. doi: 10.1128/JVI.00018-10. Epub 2010 Mar 17. J Virol. 2010. PMID: 20237080 Free PMC article.
Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance.
Ghedin E, Laplante J, DePasse J, Wentworth DE, Santos RP, Lepow ML, Porter J, Stellrecht K, Lin X, Operario D, Griesemer S, Fitch A, Halpin RA, Stockwell TB, Spiro DJ, Holmes EC, St George K. Ghedin E, et al. Among authors: lin x. J Infect Dis. 2011 Jan 15;203(2):168-74. doi: 10.1093/infdis/jiq040. J Infect Dis. 2011. PMID: 21288815 Free PMC article.
Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans.
Bahl J, Nelson MI, Chan KH, Chen R, Vijaykrishna D, Halpin RA, Stockwell TB, Lin X, Wentworth DE, Ghedin E, Guan Y, Peiris JS, Riley S, Rambaut A, Holmes EC, Smith GJ. Bahl J, et al. Among authors: lin x. Proc Natl Acad Sci U S A. 2011 Nov 29;108(48):19359-64. doi: 10.1073/pnas.1109314108. Epub 2011 Nov 14. Proc Natl Acad Sci U S A. 2011. PMID: 22084096 Free PMC article.
Genomic reassortment of influenza A virus in North American swine, 1998-2011.
Nelson MI, Detmer SE, Wentworth DE, Tan Y, Schwartzbard A, Halpin RA, Stockwell TB, Lin X, Vincent AL, Gramer MR, Holmes EC. Nelson MI, et al. Among authors: lin x. J Gen Virol. 2012 Dec;93(Pt 12):2584-2589. doi: 10.1099/vir.0.045930-0. Epub 2012 Sep 19. J Gen Virol. 2012. PMID: 22993190 Free PMC article.
Sequence analysis of in vivo defective interfering-like RNA of influenza A H1N1 pandemic virus.
Saira K, Lin X, DePasse JV, Halpin R, Twaddle A, Stockwell T, Angus B, Cozzi-Lepri A, Delfino M, Dugan V, Dwyer DE, Freiberg M, Horban A, Losso M, Lynfield R, Wentworth DN, Holmes EC, Davey R, Wentworth DE, Ghedin E; INSIGHT FLU002 Study Group; INSIGHT FLU003 Study Group. Saira K, et al. Among authors: lin x. J Virol. 2013 Jul;87(14):8064-74. doi: 10.1128/JVI.00240-13. Epub 2013 May 15. J Virol. 2013. PMID: 23678180 Free PMC article.
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