Orr AA - Search Results

1

A high-throughput and rapid computational method for screening of RNA post-transcriptional modifications that can be recognized by target proteins.

Orr AA, Gonzalez-Rivera JC, Wilson M, Bhikha PR, Wang D, Contreras LM, Tamamis P. Orr AA, et al. Methods. 2018 Jul 1;143:34-47. doi: 10.1016/j.ymeth.2018.01.015. Epub 2018 Feb 1. Methods. 2018. PMID: 29408626

2

Editor's Highlight: Microbial-Derived 1,4-Dihydroxy-2-naphthoic Acid and Related Compounds as Aryl Hydrocarbon Receptor Agonists/Antagonists: Structure-Activity Relationships and Receptor Modeling.

Cheng Y, Jin UH, Davidson LA, Chapkin RS, Jayaraman A, Tamamis P, Orr A, Allred C, Denison MS, Soshilov A, Weaver E, Safe S. Cheng Y, et al. Toxicol Sci. 2017 Feb;155(2):458-473. doi: 10.1093/toxsci/kfw230. Epub 2016 Nov 11. Toxicol Sci. 2017. PMID: 27837168 Free PMC article.

3

Uncovering the Binding and Specificity of β-Wrapins for Amyloid-β and α-Synuclein.

Orr AA, Wördehoff MM, Hoyer W, Tamamis P. Orr AA, et al. J Phys Chem B. 2016 Dec 22;120(50):12781-12794. doi: 10.1021/acs.jpcb.6b08485. Epub 2016 Dec 9. J Phys Chem B. 2016. PMID: 27934063

4

Molecular Modeling of Chemoreceptor:Ligand Interactions.

Orr AA, Jayaraman A, Tamamis P. Orr AA, et al. Methods Mol Biol. 2018;1729:353-372. doi: 10.1007/978-1-4939-7577-8_28. Methods Mol Biol. 2018. PMID: 29429104

5

Structure-Dependent Modulation of Aryl Hydrocarbon Receptor-Mediated Activities by Flavonoids.

Jin UH, Park H, Li X, Davidson LA, Allred C, Patil B, Jayaprakasha G, Orr AA, Mao L, Chapkin RS, Jayaraman A, Tamamis P, Safe S. Jin UH, et al. Among authors: orr aa. Toxicol Sci. 2018 Jul 1;164(1):205-217. doi: 10.1093/toxsci/kfy075. Toxicol Sci. 2018. PMID: 29584932 Free PMC article.

6

A novel amyloid designable scaffold and potential inhibitor inspired by GAIIG of amyloid beta and the HIV-1 V3 loop.

Kokotidou C, Jonnalagadda SVR, Orr AA, Seoane-Blanco M, Apostolidou CP, van Raaij MJ, Kotzabasaki M, Chatzoudis A, Jakubowski JM, Mossou E, Forsyth VT, Mitchell EP, Bowler MW, Llamas-Saiz AL, Tamamis P, Mitraki A. Kokotidou C, et al. Among authors: orr aa. FEBS Lett. 2018 Jun;592(11):1777-1788. doi: 10.1002/1873-3468.13096. Epub 2018 Jun 6. FEBS Lett. 2018. PMID: 29772603 Free article.

7

Computational Design of Functional Amyloid Materials with Cesium Binding, Deposition, and Capture Properties.

Jonnalagadda SVR, Kokotidou C, Orr AA, Fotopoulou E, Henderson KJ, Choi CH, Lim WT, Choi SJ, Jeong HK, Mitraki A, Tamamis P. Jonnalagadda SVR, et al. Among authors: orr aa. J Phys Chem B. 2018 Aug 2;122(30):7555-7568. doi: 10.1021/acs.jpcb.8b04103. Epub 2018 Jul 20. J Phys Chem B. 2018. PMID: 29975835

8

Virtual Screening of Chemical Compounds for Discovery of Complement C3 Ligands.

Mohan RR, Wilson M, Gorham RD Jr, Harrison RES, Morikis VA, Kieslich CA, Orr AA, Coley AV, Tamamis P, Morikis D. Mohan RR, et al. Among authors: orr aa. ACS Omega. 2018 Jun 30;3(6):6427-6438. doi: 10.1021/acsomega.8b00606. Epub 2018 Jun 15. ACS Omega. 2018. PMID: 30221234 Free PMC article.

9

Elucidating the multi-targeted anti-amyloid activity and enhanced islet amyloid polypeptide binding of β-wrapins.

Orr AA, Shaykhalishahi H, Mirecka EA, Jonnalagadda SVR, Hoyer W, Tamamis P. Orr AA, et al. Comput Chem Eng. 2018 Aug 4;116:322-332. doi: 10.1016/j.compchemeng.2018.02.013. Epub 2018 Feb 21. Comput Chem Eng. 2018. PMID: 30405276 Free PMC article.

10

Activation of COUP-TFI by a Novel Diindolylmethane Derivative.

Yoon K, Chen CC, Orr AA, Barreto PN, Tamamis P, Safe S. Yoon K, et al. Among authors: orr aa. Cells. 2019 Mar 7;8(3):220. doi: 10.3390/cells8030220. Cells. 2019. PMID: 30866413 Free PMC article.

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