Tyson JJ - Search Results

1

CrossPlan: systematic planning of genetic crosses to validate mathematical models.

Pratapa A, Adames N, Kraikivski P, Franzese N, Tyson JJ, Peccoud J, Murali TM. Pratapa A, et al. Among authors: tyson jj. Bioinformatics. 2018 Jul 1;34(13):2237-2244. doi: 10.1093/bioinformatics/bty072. Bioinformatics. 2018. PMID: 29432533 Free PMC article.

2

the JigCell model builder and run manager.

Vass M, Allen N, Shaffer CA, Ramakrishnan N, Watson LT, Tyson JJ. Vass M, et al. Among authors: tyson jj. Bioinformatics. 2004 Dec 12;20(18):3680-1. doi: 10.1093/bioinformatics/bth422. Epub 2004 Jul 23. Bioinformatics. 2004. PMID: 15273159

3

Temporal controls of the asymmetric cell division cycle in Caulobacter crescentus.

Li S, Brazhnik P, Sobral B, Tyson JJ. Li S, et al. Among authors: tyson jj. PLoS Comput Biol. 2009 Aug;5(8):e1000463. doi: 10.1371/journal.pcbi.1000463. Epub 2009 Aug 14. PLoS Comput Biol. 2009. PMID: 19680425 Free PMC article.

4

Model aggregation: a building-block approach to creating large macromolecular regulatory networks.

Randhawa R, Shaffer CA, Tyson JJ. Randhawa R, et al. Among authors: tyson jj. Bioinformatics. 2009 Dec 15;25(24):3289-95. doi: 10.1093/bioinformatics/btp581. Epub 2009 Oct 29. Bioinformatics. 2009. PMID: 19880372 Free PMC article.

5

Stochastic exit from mitosis in budding yeast: model predictions and experimental observations.

Ball DA, Ahn TH, Wang P, Chen KC, Cao Y, Tyson JJ, Peccoud J, Baumann WT. Ball DA, et al. Among authors: tyson jj. Cell Cycle. 2011 Mar 15;10(6):999-1009. doi: 10.4161/cc.10.6.14966. Epub 2011 Mar 15. Cell Cycle. 2011. PMID: 21350333 Free PMC article.

6

Oscillatory dynamics of cell cycle proteins in single yeast cells analyzed by imaging cytometry.

Ball DA, Marchand J, Poulet M, Baumann WT, Chen KC, Tyson JJ, Peccoud J. Ball DA, et al. Among authors: tyson jj. PLoS One. 2011;6(10):e26272. doi: 10.1371/journal.pone.0026272. Epub 2011 Oct 26. PLoS One. 2011. PMID: 22046265 Free PMC article.

7

Top-down network analysis to drive bottom-up modeling of physiological processes.

Poirel CL, Rodrigues RR, Chen KC, Tyson JJ, Murali TM. Poirel CL, et al. Among authors: tyson jj. J Comput Biol. 2013 May;20(5):409-18. doi: 10.1089/cmb.2012.0274. J Comput Biol. 2013. PMID: 23641868 Free PMC article.

8

Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model.

Oguz C, Laomettachit T, Chen KC, Watson LT, Baumann WT, Tyson JJ. Oguz C, et al. Among authors: tyson jj. BMC Syst Biol. 2013 Jun 28;7:53. doi: 10.1186/1752-0509-7-53. BMC Syst Biol. 2013. PMID: 23809412 Free PMC article.

9

Measurement and modeling of transcriptional noise in the cell cycle regulatory network.

Ball DA, Adames NR, Reischmann N, Barik D, Franck CT, Tyson JJ, Peccoud J. Ball DA, et al. Among authors: tyson jj. Cell Cycle. 2013 Oct 1;12(19):3203-18. doi: 10.4161/cc.26257. Epub 2013 Sep 4. Cell Cycle. 2013. PMID: 24013422 Free PMC article.

10

Experimental testing of a new integrated model of the budding yeast Start transition.

Adames NR, Schuck PL, Chen KC, Murali TM, Tyson JJ, Peccoud J. Adames NR, et al. Among authors: tyson jj. Mol Biol Cell. 2015 Nov 5;26(22):3966-84. doi: 10.1091/mbc.E15-06-0358. Epub 2015 Aug 26. Mol Biol Cell. 2015. PMID: 26310445 Free PMC article.

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