Govindaraj RG - Search Results

1

Comparative assessment of strategies to identify similar ligand-binding pockets in proteins.

Govindaraj RG, Brylinski M. Govindaraj RG, et al. BMC Bioinformatics. 2018 Mar 9;19(1):91. doi: 10.1186/s12859-018-2109-2. BMC Bioinformatics. 2018. PMID: 29523085 Free PMC article.

2

eModel-BDB: a database of comparative structure models of drug-target interactions from the Binding Database.

Naderi M, Govindaraj RG, Brylinski M. Naderi M, et al. Among authors: govindaraj rg. Gigascience. 2018 Aug 1;7(8):giy091. doi: 10.1093/gigascience/giy091. Gigascience. 2018. PMID: 30052959 Free PMC article.

3

Binding site matching in rational drug design: algorithms and applications.

Naderi M, Lemoine JM, Govindaraj RG, Kana OZ, Feinstein WP, Brylinski M. Naderi M, et al. Among authors: govindaraj rg. Brief Bioinform. 2019 Nov 27;20(6):2167-2184. doi: 10.1093/bib/bby078. Brief Bioinform. 2019. PMID: 30169563 Free PMC article. Review.

4

DeepDrug3D: Classification of ligand-binding pockets in proteins with a convolutional neural network.

Pu L, Govindaraj RG, Lemoine JM, Wu HC, Brylinski M. Pu L, et al. Among authors: govindaraj rg. PLoS Comput Biol. 2019 Feb 4;15(2):e1006718. doi: 10.1371/journal.pcbi.1006718. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30716081 Free PMC article.

5

eRepo-ORP: Exploring the Opportunity Space to Combat Orphan Diseases with Existing Drugs.

Brylinski M, Naderi M, Govindaraj RG, Lemoine J. Brylinski M, et al. Among authors: govindaraj rg. J Mol Biol. 2018 Jul 20;430(15):2266-2273. doi: 10.1016/j.jmb.2017.12.001. Epub 2017 Dec 10. J Mol Biol. 2018. PMID: 29237557 Free PMC article.

6

Large-scale computational drug repositioning to find treatments for rare diseases.

Govindaraj RG, Naderi M, Singha M, Lemoine J, Brylinski M. Govindaraj RG, et al. NPJ Syst Biol Appl. 2018 Mar 13;4:13. doi: 10.1038/s41540-018-0050-7. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 29560273 Free PMC article.

7

iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction.

Manavalan B, Govindaraj RG, Shin TH, Kim MO, Lee G. Manavalan B, et al. Among authors: govindaraj rg. Front Immunol. 2018 Jul 27;9:1695. doi: 10.3389/fimmu.2018.01695. eCollection 2018. Front Immunol. 2018. PMID: 30100904 Free PMC article.

8

Comparative analysis of species-specific ligand recognition in Toll-like receptor 8 signaling: a hypothesis.

Govindaraj RG, Manavalan B, Basith S, Choi S. Govindaraj RG, et al. PLoS One. 2011;6(9):e25118. doi: 10.1371/journal.pone.0025118. Epub 2011 Sep 20. PLoS One. 2011. PMID: 21949866 Free PMC article.

9

Molecular modeling-based evaluation of hTLR10 and identification of potential ligands in Toll-like receptor signaling.

Govindaraj RG, Manavalan B, Lee G, Choi S. Govindaraj RG, et al. PLoS One. 2010 Sep 16;5(9):e12713. doi: 10.1371/journal.pone.0012713. PLoS One. 2010. PMID: 20877634 Free PMC article.

10

Molecular modeling-based evaluation of dual function of IκBζ ankyrin repeat domain in toll-like receptor signaling.

Manavalan B, Govindaraj R, Lee G, Choi S. Manavalan B, et al. J Mol Recognit. 2011 Jul-Aug;24(4):597-607. doi: 10.1002/jmr.1085. Epub 2010 Nov 26. J Mol Recognit. 2011. PMID: 21472811

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