Drabløs F - Search Results

1

Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized.

Rye MB, Bertilsson H, Andersen MK, Rise K, Bathen TF, Drabløs F, Tessem MB. Rye MB, et al. Among authors: drablos f. BMC Cancer. 2018 Apr 27;18(1):478. doi: 10.1186/s12885-018-4373-y. BMC Cancer. 2018. PMID: 29703166 Free PMC article.

2

A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs.

Rye MB, Sætrom P, Drabløs F. Rye MB, et al. Among authors: drablos f. Nucleic Acids Res. 2011 Mar;39(4):e25. doi: 10.1093/nar/gkq1187. Epub 2010 Nov 26. Nucleic Acids Res. 2011. PMID: 21113027 Free PMC article.

3

A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites.

Håndstad T, Rye MB, Drabløs F, Sætrom P. Håndstad T, et al. Among authors: drablos f. PLoS One. 2011 Apr 14;6(4):e18430. doi: 10.1371/journal.pone.0018430. PLoS One. 2011. PMID: 21533218 Free PMC article.

4

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F. Rye M, et al. Among authors: drablos f. BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80. BMC Biol. 2011. PMID: 22115494 Free PMC article.

5

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding.

Kornacker K, Rye MB, Håndstad T, Drabløs F. Kornacker K, et al. Among authors: drablos f. BMC Bioinformatics. 2012 Jul 24;13:176. doi: 10.1186/1471-2105-13-176. BMC Bioinformatics. 2012. PMID: 22827163 Free PMC article.

6

Cell-type specificity of ChIP-predicted transcription factor binding sites.

Håndstad T, Rye M, Močnik R, Drabløs F, Sætrom P. Håndstad T, et al. Among authors: drablos f. BMC Genomics. 2012 Aug 3;13:372. doi: 10.1186/1471-2164-13-372. BMC Genomics. 2012. PMID: 22863112 Free PMC article.

7

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E. Sandve GK, et al. Among authors: drablos f. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W133-41. doi: 10.1093/nar/gkt342. Epub 2013 Apr 30. Nucleic Acids Res. 2013. PMID: 23632163 Free PMC article.

8

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.

Rye M, Sandve GK, Daub CO, Kawaji H, Carninci P, Forrest AR, Drabløs F; FANTOM consortium. Rye M, et al. Among authors: drablos f. BMC Genomics. 2014 Mar 26;15:120. doi: 10.1186/1471-2164-15-120. BMC Genomics. 2014. PMID: 24669905 Free PMC article.

9

An atlas of active enhancers across human cell types and tissues.

Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C, Suzuki T, Ntini E, Arner E, Valen E, Li K, Schwarzfischer L, Glatz D, Raithel J, Lilje B, Rapin N, Bagger FO, Jørgensen M, Andersen PR, Bertin N, Rackham O, Burroughs AM, Baillie JK, Ishizu Y, Shimizu Y, Furuhata E, Maeda S, Negishi Y, Mungall CJ, Meehan TF, Lassmann T, Itoh M, Kawaji H, Kondo N, Kawai J, Lennartsson A, Daub CO, Heutink P, Hume DA, Jensen TH, Suzuki H, Hayashizaki Y, Müller F, Forrest ARR, Carninci P, Rehli M, Sandelin A. Andersson R, et al. Nature. 2014 Mar 27;507(7493):455-461. doi: 10.1038/nature12787. Nature. 2014. PMID: 24670763 Free PMC article.

10

Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer.

Rye MB, Bertilsson H, Drabløs F, Angelsen A, Bathen TF, Tessem MB. Rye MB, et al. Among authors: drablos f. BMC Med Genomics. 2014 Aug 12;7:50. doi: 10.1186/1755-8794-7-50. BMC Med Genomics. 2014. PMID: 25115192 Free PMC article.

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