Okrah K - Search Results

1

The Splicing Factor RNA-Binding Fox Protein 1 Mediates the Cellular Immune Response in Drosophila melanogaster.

Nazario-Toole AE, Robalino J, Okrah K, Corrada-Bravo H, Mount SM, Wu LP. Nazario-Toole AE, et al. Among authors: okrah k. J Immunol. 2018 Aug 15;201(4):1154-1164. doi: 10.4049/jimmunol.1800496. Epub 2018 Jul 11. J Immunol. 2018. PMID: 29997126 Free PMC article.

2

Shape analysis of high-throughput transcriptomics experiment data.

Okrah K, Corrada Bravo H. Okrah K, et al. Biostatistics. 2015 Oct;16(4):627-40. doi: 10.1093/biostatistics/kxv018. Epub 2015 May 11. Biostatistics. 2015. PMID: 25964664 Free PMC article.

3

Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions.

Dillon LA, Suresh R, Okrah K, Corrada Bravo H, Mosser DM, El-Sayed NM. Dillon LA, et al. Among authors: okrah k. BMC Genomics. 2015 Dec 29;16:1108. doi: 10.1186/s12864-015-2237-2. BMC Genomics. 2015. PMID: 26715493 Free PMC article.

4

Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation.

Dillon LA, Okrah K, Hughitt VK, Suresh R, Li Y, Fernandes MC, Belew AT, Corrada Bravo H, Mosser DM, El-Sayed NM. Dillon LA, et al. Among authors: okrah k. Nucleic Acids Res. 2015 Aug 18;43(14):6799-813. doi: 10.1093/nar/gkv656. Epub 2015 Jul 6. Nucleic Acids Res. 2015. PMID: 26150419 Free PMC article.

5

Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection.

Li Y, Shah-Simpson S, Okrah K, Belew AT, Choi J, Caradonna KL, Padmanabhan P, Ndegwa DM, Temanni MR, Corrada Bravo H, El-Sayed NM, Burleigh BA. Li Y, et al. Among authors: okrah k. PLoS Pathog. 2016 Apr 5;12(4):e1005511. doi: 10.1371/journal.ppat.1005511. eCollection 2016 Apr. PLoS Pathog. 2016. PMID: 27046031 Free PMC article.

6

DNA Methylation Patterns in Cord Blood of Neonates Across Gestational Age: Association With Cell-Type Proportions.

Braid SM, Okrah K, Shetty A, Corrada Bravo H. Braid SM, et al. Among authors: okrah k. Nurs Res. 2017 Mar/Apr;66(2):115-122. doi: 10.1097/NNR.0000000000000210. Nurs Res. 2017. PMID: 28125511 Free PMC article.

7

Analysis and correction of compositional bias in sparse sequencing count data.

Kumar MS, Slud EV, Okrah K, Hicks SC, Hannenhalli S, Corrada Bravo H. Kumar MS, et al. Among authors: okrah k. BMC Genomics. 2018 Nov 6;19(1):799. doi: 10.1186/s12864-018-5160-5. BMC Genomics. 2018. PMID: 30400812 Free PMC article.

8

Smooth quantile normalization.

Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Bravo HC. Hicks SC, et al. Among authors: okrah k. Biostatistics. 2018 Apr 1;19(2):185-198. doi: 10.1093/biostatistics/kxx028. Biostatistics. 2018. PMID: 29036413 Free PMC article.

9

BatchQC: interactive software for evaluating sample and batch effects in genomic data.

Manimaran S, Selby HM, Okrah K, Ruberman C, Leek JT, Quackenbush J, Haibe-Kains B, Bravo HC, Johnson WE. Manimaran S, et al. Among authors: okrah k. Bioinformatics. 2016 Dec 15;32(24):3836-3838. doi: 10.1093/bioinformatics/btw538. Epub 2016 Aug 18. Bioinformatics. 2016. PMID: 27540268 Free PMC article.

10

Integrated genomic analysis of colorectal cancer progression reveals activation of EGFR through demethylation of the EREG promoter.

Qu X, Sandmann T, Frierson H Jr, Fu L, Fuentes E, Walter K, Okrah K, Rumpel C, Moskaluk C, Lu S, Wang Y, Bourgon R, Penuel E, Pirzkall A, Amler L, Lackner MR, Tabernero J, Hampton GM, Kabbarah O. Qu X, et al. Among authors: okrah k. Oncogene. 2016 Dec 15;35(50):6403-6415. doi: 10.1038/onc.2016.170. Epub 2016 Jun 6. Oncogene. 2016. PMID: 27270421 Free PMC article.

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