Chen K - Search Results

1

Comprehensive Characterization of Cancer Driver Genes and Mutations.

Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Kwok-Shing Ng P, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network; Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L. Bailey MH, et al. Among authors: chen k. Cell. 2018 Aug 9;174(4):1034-1035. doi: 10.1016/j.cell.2018.07.034. Cell. 2018. PMID: 30096302 Free PMC article. No abstract available.

2

PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.

Chen K, McLellan MD, Ding L, Wendl MC, Kasai Y, Wilson RK, Mardis ER. Chen K, et al. Genome Res. 2007 May;17(5):659-66. doi: 10.1101/gr.6151507. Epub 2007 Apr 6. Genome Res. 2007. PMID: 17416743 Free PMC article.

3

Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Cancer Genome Atlas Research Network. Cancer Genome Atlas Research Network. Nature. 2008 Oct 23;455(7216):1061-8. doi: 10.1038/nature07385. Epub 2008 Sep 4. Nature. 2008. PMID: 18772890 Free PMC article.

4

VarScan: variant detection in massively parallel sequencing of individual and pooled samples.

Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L. Koboldt DC, et al. Among authors: chen k. Bioinformatics. 2009 Sep 1;25(17):2283-5. doi: 10.1093/bioinformatics/btp373. Epub 2009 Jun 19. Bioinformatics. 2009. PMID: 19542151 Free PMC article.

5

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.

Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, Shi X, Fulton RS, Ley TJ, Wilson RK, Ding L, Mardis ER. Chen K, et al. Nat Methods. 2009 Sep;6(9):677-81. doi: 10.1038/nmeth.1363. Epub 2009 Aug 9. Nat Methods. 2009. PMID: 19668202 Free PMC article.

6

CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.

Zhang Q, Ding L, Larson DE, Koboldt DC, McLellan MD, Chen K, Shi X, Kraja A, Mardis ER, Wilson RK, Borecki IB, Province MA. Zhang Q, et al. Among authors: chen k. Bioinformatics. 2010 Feb 15;26(4):464-9. doi: 10.1093/bioinformatics/btp708. Epub 2009 Dec 23. Bioinformatics. 2010. PMID: 20031968 Free PMC article.

7

SomaticSniper: identification of somatic point mutations in whole genome sequencing data.

Larson DE, Harris CC, Chen K, Koboldt DC, Abbott TE, Dooling DJ, Ley TJ, Mardis ER, Wilson RK, Ding L. Larson DE, et al. Among authors: chen k. Bioinformatics. 2012 Feb 1;28(3):311-7. doi: 10.1093/bioinformatics/btr665. Epub 2011 Dec 6. Bioinformatics. 2012. PMID: 22155872 Free PMC article.

8

Massively parallel sequencing approaches for characterization of structural variation.

Koboldt DC, Larson DE, Chen K, Ding L, Wilson RK. Koboldt DC, et al. Among authors: chen k. Methods Mol Biol. 2012;838:369-84. doi: 10.1007/978-1-61779-507-7_18. Methods Mol Biol. 2012. PMID: 22228022 Free PMC article. Review.

9

Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells.

Young MA, Larson DE, Sun CW, George DR, Ding L, Miller CA, Lin L, Pawlik KM, Chen K, Fan X, Schmidt H, Kalicki-Veizer J, Cook LL, Swift GW, Demeter RT, Wendl MC, Sands MS, Mardis ER, Wilson RK, Townes TM, Ley TJ. Young MA, et al. Among authors: chen k. Cell Stem Cell. 2012 May 4;10(5):570-82. doi: 10.1016/j.stem.2012.03.002. Epub 2012 Apr 26. Cell Stem Cell. 2012. PMID: 22542160 Free PMC article.

10

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.

Chen K, Wallis JW, Kandoth C, Kalicki-Veizer JM, Mungall KL, Mungall AJ, Jones SJ, Marra MA, Ley TJ, Mardis ER, Wilson RK, Weinstein JN, Ding L. Chen K, et al. Bioinformatics. 2012 Jul 15;28(14):1923-4. doi: 10.1093/bioinformatics/bts272. Epub 2012 May 4. Bioinformatics. 2012. PMID: 22563071 Free PMC article.

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