Cao MD - Search Results

1

Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing.

Raftery LJ, Howard CB, Grewal YS, Vaidyanathan R, Jones ML, Anderson W, Korbie D, Duarte T, Cao MD, Nguyen SH, Coin LJM, Mahler SM, Trau M. Raftery LJ, et al. Among authors: cao md. Lab Chip. 2019 Dec 21;19(24):4083-4092. doi: 10.1039/c9lc00978g. Epub 2019 Nov 12. Lab Chip. 2019. PMID: 31712799

2

Realtime analysis and visualization of MinION sequencing data with npReader.

Cao MD, Ganesamoorthy D, Cooper MA, Coin LJ. Cao MD, et al. Bioinformatics. 2016 Mar 1;32(5):764-6. doi: 10.1093/bioinformatics/btv658. Epub 2015 Nov 10. Bioinformatics. 2016. PMID: 26556383 Free article.

3

Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603.

Elliott AG, Ganesamoorthy D, Coin L, Cooper MA, Cao MD. Elliott AG, et al. Among authors: cao md. Genome Announc. 2016 May 26;4(3):e00438-16. doi: 10.1128/genomeA.00438-16. Genome Announc. 2016. PMID: 27231369 Free PMC article.

4

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing.

Cao MD, Ganesamoorthy D, Elliott AG, Zhang H, Cooper MA, Coin LJ. Cao MD, et al. Gigascience. 2016 Jul 26;5(1):32. doi: 10.1186/s13742-016-0137-2. Gigascience. 2016. PMID: 27457073 Free PMC article.

5

Scaffolding and completing genome assemblies in real-time with nanopore sequencing.

Cao MD, Nguyen SH, Ganesamoorthy D, Elliott AG, Cooper MA, Coin LJ. Cao MD, et al. Nat Commun. 2017 Feb 20;8:14515. doi: 10.1038/ncomms14515. Nat Commun. 2017. PMID: 28218240 Free PMC article.

6

Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode.

Nguyen SH, Duarte TPS, Coin LJM, Cao MD. Nguyen SH, et al. Among authors: cao md. Bioinformatics. 2017 Dec 15;33(24):3988-3990. doi: 10.1093/bioinformatics/btx537. Bioinformatics. 2017. PMID: 28961965

7

Simulating the dynamics of targeted capture sequencing with CapSim.

Cao MD, Ganesamoorthy D, Zhou C, Coin LJM. Cao MD, et al. Bioinformatics. 2018 Mar 1;34(5):873-874. doi: 10.1093/bioinformatics/btx691. Bioinformatics. 2018. PMID: 29092025 Free PMC article.

8

Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae.

Pitt ME, Elliott AG, Cao MD, Ganesamoorthy D, Karaiskos I, Giamarellou H, Abboud CS, Blaskovich MAT, Cooper MA, Coin LJM. Pitt ME, et al. Among authors: cao md. Microb Genom. 2018 Mar;4(3):e000158. doi: 10.1099/mgen.0.000158. Epub 2018 Feb 12. Microb Genom. 2018. PMID: 29431605 Free PMC article.

9

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning.

Teng H, Cao MD, Hall MB, Duarte T, Wang S, Coin LJM. Teng H, et al. Among authors: cao md. Gigascience. 2018 May 1;7(5):giy037. doi: 10.1093/gigascience/giy037. Gigascience. 2018. PMID: 29648610 Free PMC article.

10

npInv: accurate detection and genotyping of inversions using long read sub-alignment.

Shao H, Ganesamoorthy D, Duarte T, Cao MD, Hoggart CJ, Coin LJM. Shao H, et al. Among authors: cao md. BMC Bioinformatics. 2018 Jul 13;19(1):261. doi: 10.1186/s12859-018-2252-9. BMC Bioinformatics. 2018. PMID: 30001702 Free PMC article.

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