Duarte T - Search Results

1

Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing.

Raftery LJ, Howard CB, Grewal YS, Vaidyanathan R, Jones ML, Anderson W, Korbie D, Duarte T, Cao MD, Nguyen SH, Coin LJM, Mahler SM, Trau M. Raftery LJ, et al. Among authors: duarte t. Lab Chip. 2019 Dec 21;19(24):4083-4092. doi: 10.1039/c9lc00978g. Epub 2019 Nov 12. Lab Chip. 2019. PMID: 31712799

2

Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode.

Nguyen SH, Duarte TPS, Coin LJM, Cao MD. Nguyen SH, et al. Bioinformatics. 2017 Dec 15;33(24):3988-3990. doi: 10.1093/bioinformatics/btx537. Bioinformatics. 2017. PMID: 28961965

3

Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing.

Pitt ME, Nguyen SH, Duarte TPS, Teng H, Blaskovich MAT, Cooper MA, Coin LJM. Pitt ME, et al. Among authors: duarte tps. Gigascience. 2020 Feb 1;9(2):giaa002. doi: 10.1093/gigascience/giaa002. Gigascience. 2020. PMID: 32016399 Free PMC article.

4

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing.

Ganesamoorthy D, Cao MD, Duarte T, Chen W, Coin L. Ganesamoorthy D, et al. Among authors: duarte t. BMC Bioinformatics. 2018 Jul 16;19(1):267. doi: 10.1186/s12859-018-2282-3. BMC Bioinformatics. 2018. PMID: 30012093 Free PMC article.

5

Correction to: Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning.

Teng H, Cao MD, Hall MB, Duarte T, Wang S, Coin LJM. Teng H, et al. Among authors: duarte t. Gigascience. 2019 May 1;8(5):giz049. doi: 10.1093/gigascience/giz049. Gigascience. 2019. PMID: 31077312 Free PMC article. No abstract available.

6

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning.

Teng H, Cao MD, Hall MB, Duarte T, Wang S, Coin LJM. Teng H, et al. Among authors: duarte t. Gigascience. 2018 May 1;7(5):giy037. doi: 10.1093/gigascience/giy037. Gigascience. 2018. PMID: 29648610 Free PMC article.

7

npInv: accurate detection and genotyping of inversions using long read sub-alignment.

Shao H, Ganesamoorthy D, Duarte T, Cao MD, Hoggart CJ, Coin LJM. Shao H, et al. Among authors: duarte t. BMC Bioinformatics. 2018 Jul 13;19(1):261. doi: 10.1186/s12859-018-2252-9. BMC Bioinformatics. 2018. PMID: 30001702 Free PMC article.

8

Triclosan at environmentally relevant concentrations promotes horizontal transfer of multidrug resistance genes within and across bacterial genera.

Lu J, Wang Y, Li J, Mao L, Nguyen SH, Duarte T, Coin L, Bond P, Yuan Z, Guo J. Lu J, et al. Among authors: duarte t. Environ Int. 2018 Dec;121(Pt 2):1217-1226. doi: 10.1016/j.envint.2018.10.040. Epub 2018 Oct 30. Environ Int. 2018. PMID: 30389380 Free article.

9

Rapid diagnosis of Capnocytophaga canimorsus septic shock in an immunocompetent individual using real-time Nanopore sequencing: a case report.

Bialasiewicz S, Duarte TPS, Nguyen SH, Sukumaran V, Stewart A, Appleton S, Pitt ME, Bainomugisa A, Jennison AV, Graham R, Coin LJM, Hajkowicz K. Bialasiewicz S, et al. BMC Infect Dis. 2019 Jul 24;19(1):660. doi: 10.1186/s12879-019-4173-2. BMC Infect Dis. 2019. PMID: 31340776 Free PMC article.

10

Complete Genome Sequences of Clinical Pandoraea fibrosis Isolates.

Pitt ME, Nguyen SH, Duarte TPS, Roddam LF, Blaskovich MAT, Cooper MA, Coin LJM. Pitt ME, et al. Among authors: duarte tps. Microbiol Resour Announc. 2020 Mar 26;9(13):e00060-20. doi: 10.1128/MRA.00060-20. Microbiol Resour Announc. 2020. PMID: 32217674 Free PMC article.

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