Li F - Search Results

1

The asynchronous establishment of chromatin 3D architecture between in vitro fertilized and uniparental preimplantation pig embryos.

Li F, Wang D, Song R, Cao C, Zhang Z, Wang Y, Li X, Huang J, Liu Q, Hou N, Xu B, Li X, Gao X, Jia Y, Zhao J, Wang Y. Li F, et al. Among authors: li x. Genome Biol. 2020 Aug 10;21(1):203. doi: 10.1186/s13059-020-02095-z. Genome Biol. 2020. PMID: 32778155 Free PMC article.

2

Cell cycle arrest explains the observed bulk 3D genomic alterations in response to long-term heat shock in K562 cells.

Xu B, Gao X, Li X, Jia Y, Li F, Zhang Z. Xu B, et al. Among authors: li f, li x. Genome Res. 2022 Jul;32(7):1285-1297. doi: 10.1101/gr.276554.122. Epub 2022 Jul 14. Genome Res. 2022. PMID: 35835565 Free PMC article.

3

Characteristic arrangement of nucleosomes is predictive of chromatin interactions at kilobase resolution.

Zhang H, Li F, Jia Y, Xu B, Zhang Y, Li X, Zhang Z. Zhang H, et al. Among authors: li f, li x. Nucleic Acids Res. 2017 Dec 15;45(22):12739-12751. doi: 10.1093/nar/gkx885. Nucleic Acids Res. 2017. PMID: 29036650 Free PMC article.

4

The Dynamic 3D Genome in Gametogenesis and Early Embryonic Development.

Li F, An Z, Zhang Z. Li F, et al. Cells. 2019 Jul 29;8(8):788. doi: 10.3390/cells8080788. Cells. 2019. PMID: 31362461 Free PMC article. Review.

5

Evidence of constraint in the 3D genome for trans-splicing in human cells.

Liu C, Zhang Y, Li X, Jia Y, Li F, Li J, Zhang Z. Liu C, et al. Among authors: li f, li j, li x. Sci China Life Sci. 2020 Sep;63(9):1380-1393. doi: 10.1007/s11427-019-1609-6. Epub 2020 Mar 26. Sci China Life Sci. 2020. PMID: 32221814

6

DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data.

Xu B, Li X, Gao X, Jia Y, Liu J, Li F, Zhang Z. Xu B, et al. Among authors: li f, li x. Brief Bioinform. 2022 Jan 17;23(1):bbab469. doi: 10.1093/bib/bbab469. Brief Bioinform. 2022. PMID: 34875002

7

Delta: a new web-based 3D genome visualization and analysis platform.

Tang B, Li F, Li J, Zhao W, Zhang Z. Tang B, et al. Among authors: li f, li j. Bioinformatics. 2018 Apr 15;34(8):1409-1410. doi: 10.1093/bioinformatics/btx805. Bioinformatics. 2018. PMID: 29253110

8

A hypothetical model of trans-acting R-loops-mediated promoter-enhancer interactions by Alu elements.

Bai X, Li F, Zhang Z. Bai X, et al. Among authors: li f. J Genet Genomics. 2021 Nov 20;48(11):1007-1019. doi: 10.1016/j.jgg.2021.07.005. Epub 2021 Jul 29. J Genet Genomics. 2021. PMID: 34531149

9

Delta.AR: An augmented reality-based visualization platform for 3D genome.

Tang B, Li X, Li G, Tian D, Li F, Zhang Z. Tang B, et al. Among authors: li f, li g, li x. Innovation (Camb). 2021 Aug 3;2(3):100149. doi: 10.1016/j.xinn.2021.100149. eCollection 2021 Aug 28. Innovation (Camb). 2021. PMID: 34557786 Free PMC article. No abstract available.

10

Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite.

Liu J, An Z, Luo J, Li J, Li F, Zhang Z. Liu J, et al. Among authors: li f, li j. Bioinformatics. 2020 Apr 1;36(7):2033-2039. doi: 10.1093/bioinformatics/btz900. Bioinformatics. 2020. PMID: 31794005 Free PMC article.

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