Park PJ - Search Results

1

The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae.

Reim NI, Chuang J, Jain D, Alver BH, Park PJ, Winston F. Reim NI, et al. Among authors: park pj. Nucleic Acids Res. 2020 Oct 9;48(18):10241-10258. doi: 10.1093/nar/gkaa745. Nucleic Acids Res. 2020. PMID: 32941642 Free PMC article.

2

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility.

Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY. Mieczkowski J, et al. Among authors: park pj. Nat Commun. 2016 May 6;7:11485. doi: 10.1038/ncomms11485. Nat Commun. 2016. PMID: 27151365 Free PMC article.

3

SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation.

Wang X, Lee RS, Alver BH, Haswell JR, Wang S, Mieczkowski J, Drier Y, Gillespie SM, Archer TC, Wu JN, Tzvetkov EP, Troisi EC, Pomeroy SL, Biegel JA, Tolstorukov MY, Bernstein BE, Park PJ, Roberts CW. Wang X, et al. Among authors: park pj. Nat Genet. 2017 Feb;49(2):289-295. doi: 10.1038/ng.3746. Epub 2016 Dec 12. Nat Genet. 2017. PMID: 27941797 Free PMC article.

4

ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice.

Mathur R, Alver BH, San Roman AK, Wilson BG, Wang X, Agoston AT, Park PJ, Shivdasani RA, Roberts CW. Mathur R, et al. Among authors: park pj. Nat Genet. 2017 Feb;49(2):296-302. doi: 10.1038/ng.3744. Epub 2016 Dec 12. Nat Genet. 2017. PMID: 27941798 Free PMC article.

5

The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers.

Alver BH, Kim KH, Lu P, Wang X, Manchester HE, Wang W, Haswell JR, Park PJ, Roberts CW. Alver BH, et al. Among authors: park pj. Nat Commun. 2017 Mar 6;8:14648. doi: 10.1038/ncomms14648. Nat Commun. 2017. PMID: 28262751 Free PMC article.

6

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.

Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS; PCAWG Structural Variation Working Group; Park PJ; PCAWG Consortium. Cortés-Ciriano I, et al. Among authors: park pj. Nat Genet. 2020 Mar;52(3):331-341. doi: 10.1038/s41588-019-0576-7. Epub 2020 Feb 5. Nat Genet. 2020. PMID: 32025003 Free PMC article.

7

HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.

Wang S, Lee S, Chu C, Jain D, Kerpedjiev P, Nelson GM, Walsh JM, Alver BH, Park PJ. Wang S, et al. Among authors: park pj. Genome Biol. 2020 Mar 23;21(1):73. doi: 10.1186/s13059-020-01986-5. Genome Biol. 2020. PMID: 32293513 Free PMC article.

8

Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.

Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS; PCAWG Structural Variation Working Group; Park PJ; PCAWG Consortium. Cortés-Ciriano I, et al. Among authors: park pj. Nat Genet. 2023 May;55(5):893. doi: 10.1038/s41588-020-0634-1. Nat Genet. 2023. PMID: 32404988 Free PMC article. No abstract available.

9

Epigenetic transcriptional reprogramming by WT1 mediates a repair response during podocyte injury.

Ettou S, Jung YL, Miyoshi T, Jain D, Hiratsuka K, Schumacher V, Taglienti ME, Morizane R, Park PJ, Kreidberg JA. Ettou S, et al. Among authors: park pj. Sci Adv. 2020 Jul 24;6(30):eabb5460. doi: 10.1126/sciadv.abb5460. eCollection 2020 Jul. Sci Adv. 2020. PMID: 32754639 Free PMC article.

10

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.

Jain D, Chu C, Alver BH, Lee S, Lee EA, Park PJ. Jain D, et al. Among authors: park pj. Bioinformatics. 2021 May 23;37(8):1045-1051. doi: 10.1093/bioinformatics/btaa923. Bioinformatics. 2021. PMID: 33136153 Free PMC article.

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