Cao MD - Search Results

1

Real-time resolution of short-read assembly graph using ONT long reads.

Nguyen SH, Cao MD, Coin LJM. Nguyen SH, et al. Among authors: cao md. PLoS Comput Biol. 2021 Jan 20;17(1):e1008586. doi: 10.1371/journal.pcbi.1008586. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33471816 Free PMC article.

2

Realtime analysis and visualization of MinION sequencing data with npReader.

Cao MD, Ganesamoorthy D, Cooper MA, Coin LJ. Cao MD, et al. Bioinformatics. 2016 Mar 1;32(5):764-6. doi: 10.1093/bioinformatics/btv658. Epub 2015 Nov 10. Bioinformatics. 2016. PMID: 26556383 Free article.

3

Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603.

Elliott AG, Ganesamoorthy D, Coin L, Cooper MA, Cao MD. Elliott AG, et al. Among authors: cao md. Genome Announc. 2016 May 26;4(3):e00438-16. doi: 10.1128/genomeA.00438-16. Genome Announc. 2016. PMID: 27231369 Free PMC article.

4

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing.

Cao MD, Ganesamoorthy D, Elliott AG, Zhang H, Cooper MA, Coin LJ. Cao MD, et al. Gigascience. 2016 Jul 26;5(1):32. doi: 10.1186/s13742-016-0137-2. Gigascience. 2016. PMID: 27457073 Free PMC article.

5

Scaffolding and completing genome assemblies in real-time with nanopore sequencing.

Cao MD, Nguyen SH, Ganesamoorthy D, Elliott AG, Cooper MA, Coin LJ. Cao MD, et al. Nat Commun. 2017 Feb 20;8:14515. doi: 10.1038/ncomms14515. Nat Commun. 2017. PMID: 28218240 Free PMC article.

6

Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode.

Nguyen SH, Duarte TPS, Coin LJM, Cao MD. Nguyen SH, et al. Among authors: cao md. Bioinformatics. 2017 Dec 15;33(24):3988-3990. doi: 10.1093/bioinformatics/btx537. Bioinformatics. 2017. PMID: 28961965

7

Simulating the dynamics of targeted capture sequencing with CapSim.

Cao MD, Ganesamoorthy D, Zhou C, Coin LJM. Cao MD, et al. Bioinformatics. 2018 Mar 1;34(5):873-874. doi: 10.1093/bioinformatics/btx691. Bioinformatics. 2018. PMID: 29092025 Free PMC article.

8

Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae.

Pitt ME, Elliott AG, Cao MD, Ganesamoorthy D, Karaiskos I, Giamarellou H, Abboud CS, Blaskovich MAT, Cooper MA, Coin LJM. Pitt ME, et al. Among authors: cao md. Microb Genom. 2018 Mar;4(3):e000158. doi: 10.1099/mgen.0.000158. Epub 2018 Feb 12. Microb Genom. 2018. PMID: 29431605 Free PMC article.

9

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning.

Teng H, Cao MD, Hall MB, Duarte T, Wang S, Coin LJM. Teng H, et al. Among authors: cao md. Gigascience. 2018 May 1;7(5):giy037. doi: 10.1093/gigascience/giy037. Gigascience. 2018. PMID: 29648610 Free PMC article.

10

npInv: accurate detection and genotyping of inversions using long read sub-alignment.

Shao H, Ganesamoorthy D, Duarte T, Cao MD, Hoggart CJ, Coin LJM. Shao H, et al. Among authors: cao md. BMC Bioinformatics. 2018 Jul 13;19(1):261. doi: 10.1186/s12859-018-2252-9. BMC Bioinformatics. 2018. PMID: 30001702 Free PMC article.

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