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Deep generative modeling for single-cell transcriptomics.
Lopez R, Regier J, Cole MB, Jordan MI, Yosef N. Lopez R, et al. Among authors: jordan mi. Nat Methods. 2018 Dec;15(12):1053-1058. doi: 10.1038/s41592-018-0229-2. Epub 2018 Nov 30. Nat Methods. 2018. PMID: 30504886 Free PMC article.
A Python library for probabilistic analysis of single-cell omics data.
Gayoso A, Lopez R, Xing G, Boyeau P, Valiollah Pour Amiri V, Hong J, Wu K, Jayasuriya M, Mehlman E, Langevin M, Liu Y, Samaran J, Misrachi G, Nazaret A, Clivio O, Xu C, Ashuach T, Gabitto M, Lotfollahi M, Svensson V, da Veiga Beltrame E, Kleshchevnikov V, Talavera-López C, Pachter L, Theis FJ, Streets A, Jordan MI, Regier J, Yosef N. Gayoso A, et al. Among authors: jordan mi. Nat Biotechnol. 2022 Feb;40(2):163-166. doi: 10.1038/s41587-021-01206-w. Nat Biotechnol. 2022. PMID: 35132262 No abstract available.
DestVI identifies continuums of cell types in spatial transcriptomics data.
Lopez R, Li B, Keren-Shaul H, Boyeau P, Kedmi M, Pilzer D, Jelinski A, Yofe I, David E, Wagner A, Ergen C, Addadi Y, Golani O, Ronchese F, Jordan MI, Amit I, Yosef N. Lopez R, et al. Among authors: jordan mi. Nat Biotechnol. 2022 Sep;40(9):1360-1369. doi: 10.1038/s41587-022-01272-8. Epub 2022 Apr 21. Nat Biotechnol. 2022. PMID: 35449415 Free PMC article.
MultiVI: deep generative model for the integration of multimodal data.
Ashuach T, Gabitto MI, Koodli RV, Saldi GA, Jordan MI, Yosef N. Ashuach T, et al. Among authors: jordan mi. Nat Methods. 2023 Aug;20(8):1222-1231. doi: 10.1038/s41592-023-01909-9. Epub 2023 Jun 29. Nat Methods. 2023. PMID: 37386189 Free PMC article.
A statistical framework for genomic data fusion.
Lanckriet GR, De Bie T, Cristianini N, Jordan MI, Noble WS. Lanckriet GR, et al. Among authors: jordan mi. Bioinformatics. 2004 Nov 1;20(16):2626-35. doi: 10.1093/bioinformatics/bth294. Epub 2004 May 6. Bioinformatics. 2004. PMID: 15130933
Protein molecular function prediction by Bayesian phylogenomics.
Engelhardt BE, Jordan MI, Muratore KE, Brenner SE. Engelhardt BE, et al. Among authors: jordan mi. PLoS Comput Biol. 2005 Oct;1(5):e45. doi: 10.1371/journal.pcbi.0010045. Epub 2005 Oct 7. PLoS Comput Biol. 2005. PMID: 16217548 Free PMC article.
Consistent probabilistic outputs for protein function prediction.
Obozinski G, Lanckriet G, Grant C, Jordan MI, Noble WS. Obozinski G, et al. Among authors: jordan mi. Genome Biol. 2008;9 Suppl 1(Suppl 1):S6. doi: 10.1186/gb-2008-9-s1-s6. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613950 Free PMC article.
80 results