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A map of rice genome variation reveals the origin of cultivated rice.
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. Huang X, et al. Among authors: lu y, lu h, lu t. Nature. 2012 Oct 25;490(7421):497-501. doi: 10.1038/nature11532. Epub 2012 Oct 3. Nature. 2012. PMID: 23034647 Free PMC article.
The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla).
Peng Z, Lu Y, Li L, Zhao Q, Feng Q, Gao Z, Lu H, Hu T, Yao N, Liu K, Li Y, Fan D, Guo Y, Li W, Lu Y, Weng Q, Zhou C, Zhang L, Huang T, Zhao Y, Zhu C, Liu X, Yang X, Wang T, Miao K, Zhuang C, Cao X, Tang W, Liu G, Liu Y, Chen J, Liu Z, Yuan L, Liu Z, Huang X, Lu T, Fei B, Ning Z, Han B, Jiang Z. Peng Z, et al. Among authors: lu y, lu h, lu t. Nat Genet. 2013 Apr;45(4):456-61, 461e1-2. doi: 10.1038/ng.2569. Epub 2013 Feb 24. Nat Genet. 2013. PMID: 23435089
A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica).
Jia G, Huang X, Zhi H, Zhao Y, Zhao Q, Li W, Chai Y, Yang L, Liu K, Lu H, Zhu C, Lu Y, Zhou C, Fan D, Weng Q, Guo Y, Huang T, Zhang L, Lu T, Feng Q, Hao H, Liu H, Lu P, Zhang N, Li Y, Guo E, Wang S, Wang S, Liu J, Zhang W, Chen G, Zhang B, Li W, Wang Y, Li H, Zhao B, Li J, Diao X, Han B. Jia G, et al. Among authors: lu y, lu h, lu p, lu t. Nat Genet. 2013 Aug;45(8):957-61. doi: 10.1038/ng.2673. Epub 2013 Jun 23. Nat Genet. 2013. PMID: 23793027
The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.
Wang Y, Lu Y, Zhang Y, Ning Z, Li Y, Zhao Q, Lu H, Huang R, Xia X, Feng Q, Liang X, Liu K, Zhang L, Lu T, Huang T, Fan D, Weng Q, Zhu C, Lu Y, Li W, Wen Z, Zhou C, Tian Q, Kang X, Shi M, Zhang W, Jang S, Du F, He S, Liao L, Li Y, Gui B, He H, Ning Z, Yang C, He L, Luo L, Yang R, Luo Q, Liu X, Li S, Huang W, Xiao L, Lin H, Han B, Zhu Z. Wang Y, et al. Among authors: lu y, lu h, lu t. Nat Genet. 2015 Jun;47(6):625-31. doi: 10.1038/ng.3280. Epub 2015 May 4. Nat Genet. 2015. PMID: 25938946
Erratum: The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.
Wang Y, Lu Y, Zhang Y, Ning Z, Li Y, Zhao Q, Lu H, Huang R, Xia X, Feng Q, Liang X, Liu K, Zhang L, Lu T, Huang T, Fan D, Weng Q, Zhu C, Lu Y, Li W, Wen Z, Zhou C, Tian Q, Kang X, Shi M, Zhang W, Jang S, Du F, He S, Liao L, Li Y, Gui B, He H, Ning Z, Yang C, He L, Luo L, Yang R, Luo Q, Liu X, Li S, Huang W, Xiao L, Lin H, Han B, Zhu Z. Wang Y, et al. Among authors: lu y, lu h, lu t. Nat Genet. 2015 Aug;47(8):962. doi: 10.1038/ng0815-962a. Nat Genet. 2015. PMID: 26220136 No abstract available.
Oxford Nanopore MinION Sequencing and Genome Assembly.
Lu H, Giordano F, Ning Z. Lu H, et al. Genomics Proteomics Bioinformatics. 2016 Oct;14(5):265-279. doi: 10.1016/j.gpb.2016.05.004. Epub 2016 Sep 17. Genomics Proteomics Bioinformatics. 2016. PMID: 27646134 Free PMC article. Review.
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
Zhao Q, Feng Q, Lu H, Li Y, Wang A, Tian Q, Zhan Q, Lu Y, Zhang L, Huang T, Wang Y, Fan D, Zhao Y, Wang Z, Zhou C, Chen J, Zhu C, Li W, Weng Q, Xu Q, Wang ZX, Wei X, Han B, Huang X. Zhao Q, et al. Among authors: lu y, lu h. Nat Genet. 2018 Feb;50(2):278-284. doi: 10.1038/s41588-018-0041-z. Epub 2018 Jan 15. Nat Genet. 2018. PMID: 29335547
Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals.
Li Y, Leveau A, Zhao Q, Feng Q, Lu H, Miao J, Xue Z, Martin AC, Wegel E, Wang J, Orme A, Rey MD, Karafiátová M, Vrána J, Steuernagel B, Joynson R, Owen C, Reed J, Louveau T, Stephenson MJ, Zhang L, Huang X, Huang T, Fan D, Zhou C, Tian Q, Li W, Lu Y, Chen J, Zhao Y, Lu Y, Zhu C, Liu Z, Polturak G, Casson R, Hill L, Moore G, Melton R, Hall N, Wulff BBH, Doležel J, Langdon T, Han B, Osbourn A. Li Y, et al. Among authors: lu y, lu h. Nat Commun. 2021 May 7;12(1):2563. doi: 10.1038/s41467-021-22920-8. Nat Commun. 2021. PMID: 33963185 Free PMC article.
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