Ness S - Search Results

1

MetaGSCA: A tool for meta-analysis of gene set differential coexpression.

Guo Y, Yu H, Song H, He J, Oyebamiji O, Kang H, Ping J, Ness S, Shyr Y, Ye F. Guo Y, et al. Among authors: ness s. PLoS Comput Biol. 2021 May 4;17(5):e1008976. doi: 10.1371/journal.pcbi.1008976. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33945541 Free PMC article.

2

Recurrent Fusions in MYB and MYBL1 Define a Common, Transcription Factor-Driven Oncogenic Pathway in Salivary Gland Adenoid Cystic Carcinoma.

Brayer KJ, Frerich CA, Kang H, Ness SA. Brayer KJ, et al. Cancer Discov. 2016 Feb;6(2):176-87. doi: 10.1158/2159-8290.CD-15-0859. Epub 2015 Dec 2. Cancer Discov. 2016. PMID: 26631070 Free PMC article.

3

Transcriptomes define distinct subgroups of salivary gland adenoid cystic carcinoma with different driver mutations and outcomes.

Frerich CA, Brayer KJ, Painter BM, Kang H, Mitani Y, El-Naggar AK, Ness SA. Frerich CA, et al. Oncotarget. 2017 Dec 23;9(7):7341-7358. doi: 10.18632/oncotarget.23641. eCollection 2018 Jan 26. Oncotarget. 2017. PMID: 29484115 Free PMC article.

4

Single-nucleotide variants in human RNA: RNA editing and beyond.

Guo Y, Yu H, Samuels DC, Yue W, Ness S, Zhao YY. Guo Y, et al. Among authors: ness s. Brief Funct Genomics. 2019 Feb 14;18(1):30-39. doi: 10.1093/bfgp/ely032. Brief Funct Genomics. 2019. PMID: 30312373 Free PMC article. Review.

5

Cancer-specific expression quantitative loci are affected by expression dysregulation.

Sheng Q, Samuels DC, Yu H, Ness S, Zhao YY, Guo Y. Sheng Q, et al. Among authors: ness s. Brief Bioinform. 2020 Jan 17;21(1):338-347. doi: 10.1093/bib/bby108. Brief Bioinform. 2020. PMID: 30475999 Free PMC article.

6

Corrigendum to: Single-nucleotide variants in human RNA: RNA editing and beyond.

Guo Y, Yu H, Samuels DC, Yue W, Ness S, Zhao YY. Guo Y, et al. Among authors: ness s. Brief Funct Genomics. 2019 Feb 14;18(1):40. doi: 10.1093/bfgp/ely041. Brief Funct Genomics. 2019. PMID: 30596888 Free PMC article. No abstract available.

7

Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples.

Chigaev M, Yu H, Samuels DC, Sheng Q, Oyebamiji O, Ness S, Yue W, Zhao YY, Guo Y. Chigaev M, et al. Among authors: ness s. Front Genet. 2019 Mar 20;10:211. doi: 10.3389/fgene.2019.00211. eCollection 2019. Front Genet. 2019. PMID: 30949194 Free PMC article.

8

Epigenetic silencing of SOCS5 potentiates JAK-STAT signaling and progression of T-cell acute lymphoblastic leukemia.

Sharma ND, Nickl CK, Kang H, Ornatowski W, Brown R, Ness SA, Loh ML, Mullighan CG, Winter SS, Hunger SP, Cannon JL, Matlawska-Wasowska K. Sharma ND, et al. Among authors: ness sa. Cancer Sci. 2019 Jun;110(6):1931-1946. doi: 10.1111/cas.14021. Epub 2019 May 3. Cancer Sci. 2019. PMID: 30974024 Free PMC article.

9

MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data.

Ping J, Oyebamiji O, Yu H, Ness S, Chien J, Ye F, Kang H, Samuels D, Ivanov S, Chen D, Zhao YY, Guo Y. Ping J, et al. Among authors: ness s. Brief Bioinform. 2020 Jul 15;21(4):1479-1486. doi: 10.1093/bib/bbz084. Brief Bioinform. 2020. PMID: 31588509 Free PMC article.

10

Advancing Pan-cancer Gene Expression Survial Analysis by Inclusion of Non-coding RNA.

Ye B, Shi J, Kang H, Oyebamiji O, Hill D, Yu H, Ness S, Ye F, Ping J, He J, Edwards J, Zhao YY, Guo Y. Ye B, et al. Among authors: ness s. RNA Biol. 2020 Nov;17(11):1666-1673. doi: 10.1080/15476286.2019.1679585. Epub 2019 Oct 18. RNA Biol. 2020. PMID: 31607216 Free PMC article.

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