Chiu YC - Search Results

1

Deep learning tackles single-cell analysis-a survey of deep learning for scRNA-seq analysis.

Flores M, Liu Z, Zhang T, Hasib MM, Chiu YC, Ye Z, Paniagua K, Jo S, Zhang J, Gao SJ, Jin YF, Chen Y, Huang Y. Flores M, et al. Among authors: chiu yc. Brief Bioinform. 2022 Jan 17;23(1):bbab531. doi: 10.1093/bib/bbab531. Brief Bioinform. 2022. PMID: 34929734 Free PMC article.

2

Gene regulation, modulation, and their applications in gene expression data analysis.

Flores M, Hsiao TH, Chiu YC, Chuang EY, Huang Y, Chen Y. Flores M, et al. Among authors: chiu yc. Adv Bioinformatics. 2013;2013:360678. doi: 10.1155/2013/360678. Epub 2013 Mar 13. Adv Bioinformatics. 2013. PMID: 23573084 Free PMC article.

3

An mRNA expression signature for prognostication in de novo acute myeloid leukemia patients with normal karyotype.

Chuang MK, Chiu YC, Chou WC, Hou HA, Tseng MH, Kuo YY, Chen Y, Chuang EY, Tien HF. Chuang MK, et al. Among authors: chiu yc. Oncotarget. 2015 Nov 17;6(36):39098-110. doi: 10.18632/oncotarget.5390. Oncotarget. 2015. PMID: 26517675 Free PMC article.

4

Differential network analysis reveals the genome-wide landscape of estrogen receptor modulation in hormonal cancers.

Hsiao TH, Chiu YC, Hsu PY, Lu TP, Lai LC, Tsai MH, Huang TH, Chuang EY, Chen Y. Hsiao TH, et al. Among authors: chiu yc. Sci Rep. 2016 Mar 14;6:23035. doi: 10.1038/srep23035. Sci Rep. 2016. PMID: 26972162 Free PMC article.

5

A simple gene set-based method accurately predicts the synergy of drug pairs.

Hsu YC, Chiu YC, Chen Y, Hsiao TH, Chuang EY. Hsu YC, et al. Among authors: chiu yc. BMC Syst Biol. 2016 Aug 26;10 Suppl 3(Suppl 3):66. doi: 10.1186/s12918-016-0310-3. BMC Syst Biol. 2016. PMID: 27585722 Free PMC article.

6

Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme.

Chiu YC, Hsiao TH, Wang LJ, Chen Y, Chuang EY. Chiu YC, et al. IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov-Dec;15(6):1754-1764. doi: 10.1109/TCBB.2016.2635646. Epub 2016 Dec 5. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 28114032

7

Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival.

Chiu YC, Wang LJ, Lu TP, Hsiao TH, Chuang EY, Chen Y. Chiu YC, et al. BMC Bioinformatics. 2017 Feb 28;18(1):132. doi: 10.1186/s12859-017-1557-4. BMC Bioinformatics. 2017. PMID: 28241741 Free PMC article.

8

Genome-wide identification of key modulators of gene-gene interaction networks in breast cancer.

Chiu YC, Wang LJ, Hsiao TH, Chuang EY, Chen Y. Chiu YC, et al. BMC Genomics. 2017 Oct 3;18(Suppl 6):679. doi: 10.1186/s12864-017-4028-4. BMC Genomics. 2017. PMID: 28984209 Free PMC article.

9

Utilizing Cancer - Functional Gene Set - Compound Networks to Identify Putative Drugs for Breast Cancer.

Hsiao TH, Chiu YC, Chen YH, Hsu YC, Chen HH, Chuang EY, Chen Y. Hsiao TH, et al. Among authors: chiu yc. Comb Chem High Throughput Screen. 2018;21(2):74-83. doi: 10.2174/1574888X13666180105125347. Comb Chem High Throughput Screen. 2018. PMID: 29303076

10

GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization.

Chen HH, Chiu YC, Zhang T, Zhang S, Huang Y, Chen Y. Chen HH, et al. Among authors: chiu yc. BMC Syst Biol. 2018 Dec 21;12(Suppl 8):142. doi: 10.1186/s12918-018-0642-2. BMC Syst Biol. 2018. PMID: 30577835 Free PMC article.

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