Chen Y - Search Results

1

MetaLogo: a heterogeneity-aware sequence logo generator and aligner.

Chen Y, He Z, Men Y, Dong G, Hu S, Ying X. Chen Y, et al. Brief Bioinform. 2022 Mar 10;23(2):bbab591. doi: 10.1093/bib/bbab591. Brief Bioinform. 2022. PMID: 35108357 Free PMC article.

2

Integrative analysis of protein-coding and non-coding RNAs identifies clinically relevant subtypes of clear cell renal cell carcinoma.

Li Z, Chen Y, Hu S, Zhang J, Wu J, Ren W, Shao N, Ying X. Li Z, et al. Among authors: chen y. Oncotarget. 2016 Dec 13;7(50):82671-82685. doi: 10.18632/oncotarget.12340. Oncotarget. 2016. PMID: 27705920 Free PMC article.

3

Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola.

Chen Y, Li Z, Hu S, Zhang J, Wu J, Shao N, Bo X, Ni M, Ying X. Chen Y, et al. Microbiome. 2017 Feb 1;5(1):15. doi: 10.1186/s40168-017-0232-3. Microbiome. 2017. PMID: 28143583 Free PMC article.

4

BCIP: a gene-centered platform for identifying potential regulatory genes in breast cancer.

Wu J, Hu S, Chen Y, Li Z, Zhang J, Yuan H, Shi Q, Shao N, Ying X. Wu J, et al. Among authors: chen y. Sci Rep. 2017 Mar 22;7:45235. doi: 10.1038/srep45235. Sci Rep. 2017. PMID: 28327601 Free PMC article.

5

Transcriptional response profiles of paired tumor-normal samples offer novel perspectives in pan-cancer analysis.

Hu S, Yuan H, Li Z, Zhang J, Wu J, Chen Y, Shi Q, Ren W, Shao N, Ying X. Hu S, et al. Among authors: chen y. Oncotarget. 2017 Jun 20;8(25):41334-41347. doi: 10.18632/oncotarget.17295. Oncotarget. 2017. PMID: 28489584 Free PMC article.

6

Corrigendum: BCIP: A gene-centered platform for identifying potential regulatory genes in breast cancer.

Wu J, Hu S, Chen Y, Li Z, Zhang J, Yuan H, Shi Q, Shao N, Ying X. Wu J, et al. Among authors: chen y. Sci Rep. 2017 Dec 22;7:46913. doi: 10.1038/srep46913. Sci Rep. 2017. PMID: 29269850 Free PMC article.

7

Transcriptome Alterations in Liver Metastases of Colorectal Cancer After Acquired Resistance to Cetuximab.

Li Z, Chen Y, Ren WU, Hu S, Tan Z, Wang Y, Chen Y, Zhang J, Wu J, Li T, Xu J, Ying X. Li Z, et al. Among authors: chen y. Cancer Genomics Proteomics. 2019 May-Jun;16(3):207-219. doi: 10.21873/cgp.20126. Cancer Genomics Proteomics. 2019. PMID: 31018951 Free PMC article. Clinical Trial.

8

Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis.

Chen Y, Liu P, Liu R, Hu S, He Z, Dong G, Feng C, An S, Ying X. Chen Y, et al. mSystems. 2021 Aug 31;6(4):e0077521. doi: 10.1128/mSystems.00775-21. Epub 2021 Aug 3. mSystems. 2021. PMID: 34342541 Free PMC article.

9

Towards Strain-Level Complexity: Sequencing Depth Required for Comprehensive Single-Nucleotide Polymorphism Analysis of the Human Gut Microbiome.

Liu P, Hu S, He Z, Feng C, Dong G, An S, Liu R, Xu F, Chen Y, Ying X. Liu P, et al. Among authors: chen y. Front Microbiol. 2022 May 5;13:828254. doi: 10.3389/fmicb.2022.828254. eCollection 2022. Front Microbiol. 2022. PMID: 35602026 Free PMC article.

10

Mosaic integration and knowledge transfer of single-cell multimodal data with MIDAS.

He Z, Hu S, Chen Y, An S, Zhou J, Liu R, Shi J, Wang J, Dong G, Shi J, Zhao J, Ou-Yang L, Zhu Y, Bo X, Ying X. He Z, et al. Among authors: chen y. Nat Biotechnol. 2024 Oct;42(10):1594-1605. doi: 10.1038/s41587-023-02040-y. Epub 2024 Jan 23. Nat Biotechnol. 2024. PMID: 38263515 Free PMC article.

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