Zou J - Search Results

1

DynaMorph: self-supervised learning of morphodynamic states of live cells.

Wu Z, Chhun BB, Popova G, Guo SM, Kim CN, Yeh LH, Nowakowski T, Zou J, Mehta SB. Wu Z, et al. Among authors: zou j. Mol Biol Cell. 2022 May 15;33(6):ar59. doi: 10.1091/mbc.E21-11-0561. Epub 2022 Feb 9. Mol Biol Cell. 2022. PMID: 35138913 Free PMC article.

2

Large dataset enables prediction of repair after CRISPR-Cas9 editing in primary T cells.

Leenay RT, Aghazadeh A, Hiatt J, Tse D, Roth TL, Apathy R, Shifrut E, Hultquist JF, Krogan N, Wu Z, Cirolia G, Canaj H, Leonetti MD, Marson A, May AP, Zou J. Leenay RT, et al. Among authors: zou j. Nat Biotechnol. 2019 Sep;37(9):1034-1037. doi: 10.1038/s41587-019-0203-2. Epub 2019 Jul 29. Nat Biotechnol. 2019. PMID: 31359007 Free PMC article.

3

Predicting target genes of non-coding regulatory variants with IRT.

Wu Z, Ioannidis NM, Zou J. Wu Z, et al. Among authors: zou j. Bioinformatics. 2020 Aug 15;36(16):4440-4448. doi: 10.1093/bioinformatics/btaa254. Bioinformatics. 2020. PMID: 32330225 Free PMC article.

4

PB-Net: Automatic peak integration by sequential deep learning for multiple reaction monitoring.

Wu Z, Serie D, Xu G, Zou J. Wu Z, et al. Among authors: zou j. J Proteomics. 2020 Jul 15;223:103820. doi: 10.1016/j.jprot.2020.103820. Epub 2020 May 13. J Proteomics. 2020. PMID: 32416316

5

Editorial: Artificial Intelligence, machine learning and the changing landscape of molecular biology.

Zou J, Li H, Plevritis S. Zou J, et al. J Mol Biol. 2022 Aug 15;434(15):167712. doi: 10.1016/j.jmb.2022.167712. Epub 2022 Jun 28. J Mol Biol. 2022. PMID: 35777464 No abstract available.

6

Graph deep learning for the characterization of tumour microenvironments from spatial protein profiles in tissue specimens.

Wu Z, Trevino AE, Wu E, Swanson K, Kim HJ, D'Angio HB, Preska R, Charville GW, Dalerba PD, Egloff AM, Uppaluri R, Duvvuri U, Mayer AT, Zou J. Wu Z, et al. Among authors: zou j. Nat Biomed Eng. 2022 Dec;6(12):1435-1448. doi: 10.1038/s41551-022-00951-w. Epub 2022 Nov 10. Nat Biomed Eng. 2022. PMID: 36357512

7

7-UP: Generating in silico CODEX from a small set of immunofluorescence markers.

Wu E, Trevino AE, Wu Z, Swanson K, Kim HJ, D'Angio HB, Preska R, Chiou AE, Charville GW, Dalerba P, Duvvuri U, Colevas AD, Levi J, Bedi N, Chang S, Sunwoo J, Egloff AM, Uppaluri R, Mayer AT, Zou J. Wu E, et al. Among authors: zou j. PNAS Nexus. 2023 May 19;2(6):pgad171. doi: 10.1093/pnasnexus/pgad171. eCollection 2023 Jun. PNAS Nexus. 2023. PMID: 37275261 Free PMC article.

8

A primer on deep learning in genomics.

Zou J, Huss M, Abid A, Mohammadi P, Torkamani A, Telenti A. Zou J, et al. Nat Genet. 2019 Jan;51(1):12-18. doi: 10.1038/s41588-018-0295-5. Epub 2018 Nov 26. Nat Genet. 2019. PMID: 30478442 Free PMC article. Review.

9

Data valuation for medical imaging using Shapley value and application to a large-scale chest X-ray dataset.

Tang S, Ghorbani A, Yamashita R, Rehman S, Dunnmon JA, Zou J, Rubin DL. Tang S, et al. Among authors: zou j. Sci Rep. 2021 Apr 16;11(1):8366. doi: 10.1038/s41598-021-87762-2. Sci Rep. 2021. PMID: 33863957 Free PMC article.

10

Machine Learning Prediction of Clinical Trial Operational Efficiency.

Wu K, Wu E, DAndrea M, Chitale N, Lim M, Dabrowski M, Kantor K, Rangi H, Liu R, Garmhausen M, Pal N, Harbron C, Rizzo S, Copping R, Zou J. Wu K, et al. Among authors: zou j. AAPS J. 2022 Apr 21;24(3):57. doi: 10.1208/s12248-022-00703-3. AAPS J. 2022. PMID: 35449371

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