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Does rapid sequence divergence preclude RNA structure conservation in vertebrates?
Seemann SE, Mirza AH, Bang-Berthelsen CH, Garde C, Christensen-Dalsgaard M, Workman CT, Pociot F, Tommerup N, Gorodkin J, Ruzzo WL. Seemann SE, et al. Among authors: ruzzo wl. Nucleic Acids Res. 2022 Mar 21;50(5):2452-2463. doi: 10.1093/nar/gkac067. Nucleic Acids Res. 2022. PMID: 35188540 Free PMC article.
The identification and functional annotation of RNA structures conserved in vertebrates.
Seemann SE, Mirza AH, Hansen C, Bang-Berthelsen CH, Garde C, Christensen-Dalsgaard M, Torarinsson E, Yao Z, Workman CT, Pociot F, Nielsen H, Tommerup N, Ruzzo WL, Gorodkin J. Seemann SE, et al. Among authors: ruzzo wl. Genome Res. 2017 Aug;27(8):1371-1383. doi: 10.1101/gr.208652.116. Epub 2017 May 9. Genome Res. 2017. PMID: 28487280 Free PMC article.
Concepts and introduction to RNA bioinformatics.
Gorodkin J, Hofacker IL, Ruzzo WL. Gorodkin J, et al. Among authors: ruzzo wl. Methods Mol Biol. 2014;1097:1-31. doi: 10.1007/978-1-62703-709-9_1. Methods Mol Biol. 2014. PMID: 24639152 Review.
De novo prediction of structured RNAs from genomic sequences.
Gorodkin J, Hofacker IL, Torarinsson E, Yao Z, Havgaard JH, Ruzzo WL. Gorodkin J, et al. Among authors: ruzzo wl. Trends Biotechnol. 2010 Jan;28(1):9-19. doi: 10.1016/j.tibtech.2009.09.006. Epub 2009 Nov 26. Trends Biotechnol. 2010. PMID: 19942311 Free PMC article. Review.
An integrative genomic approach identifies p73 and p63 as activators of miR-200 microRNA family transcription.
Knouf EC, Garg K, Arroyo JD, Correa Y, Sarkar D, Parkin RK, Wurz K, O'Briant KC, Godwin AK, Urban ND, Ruzzo WL, Gentleman R, Drescher CW, Swisher EM, Tewari M. Knouf EC, et al. Among authors: ruzzo wl. Nucleic Acids Res. 2012 Jan;40(2):499-510. doi: 10.1093/nar/gkr731. Epub 2011 Sep 14. Nucleic Acids Res. 2012. PMID: 21917857 Free PMC article.
52 results