Muth T - Search Results

1

Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly.

Beslic D, Tscheuschner G, Renard BY, Weller MG, Muth T. Beslic D, et al. Among authors: muth t. Brief Bioinform. 2023 Jan 19;24(1):bbac542. doi: 10.1093/bib/bbac542. Brief Bioinform. 2023. PMID: 36545804 Free PMC article.

2

Searching for a needle in a stack of needles: challenges in metaproteomics data analysis.

Muth T, Benndorf D, Reichl U, Rapp E, Martens L. Muth T, et al. Mol Biosyst. 2013 Apr 5;9(4):578-85. doi: 10.1039/c2mb25415h. Mol Biosyst. 2013. PMID: 23238088 Review.

3

Viewing the proteome: how to visualize proteomics data?

Oveland E, Muth T, Rapp E, Martens L, Berven FS, Barsnes H. Oveland E, et al. Among authors: muth t. Proteomics. 2015 Apr;15(8):1341-55. doi: 10.1002/pmic.201400412. Epub 2015 Jan 21. Proteomics. 2015. PMID: 25504833 Review.

4

Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.

Muth T, Rapp E, Berven FS, Barsnes H, Vaudel M. Muth T, et al. Adv Exp Med Biol. 2016;919:217-226. doi: 10.1007/978-3-319-41448-5_10. Adv Exp Med Biol. 2016. PMID: 27975219 Review.

5

The impact of sequence database choice on metaproteomic results in gut microbiota studies.

Tanca A, Palomba A, Fraumene C, Pagnozzi D, Manghina V, Deligios M, Muth T, Rapp E, Martens L, Addis MF, Uzzau S. Tanca A, et al. Among authors: muth t. Microbiome. 2016 Sep 27;4(1):51. doi: 10.1186/s40168-016-0196-8. Microbiome. 2016. PMID: 27671352 Free PMC article.

6

The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.

Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D, Eijsink VGH, Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, Uzzau S, Wilmes P, Hettich RL, Armengaud J. Van Den Bossche T, et al. Among authors: muth t. Microbiome. 2021 Dec 20;9(1):243. doi: 10.1186/s40168-021-01176-w. Microbiome. 2021. PMID: 34930457 Free PMC article.

7

Navigating through metaproteomics data: a logbook of database searching.

Muth T, Kolmeder CA, Salojärvi J, Keskitalo S, Varjosalo M, Verdam FJ, Rensen SS, Reichl U, de Vos WM, Rapp E, Martens L. Muth T, et al. Proteomics. 2015 Oct;15(20):3439-53. doi: 10.1002/pmic.201400560. Epub 2015 Apr 27. Proteomics. 2015. PMID: 25778831

8

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD. Blank C, et al. Among authors: muth t. Proteomes. 2018 Jan 31;6(1):7. doi: 10.3390/proteomes6010007. Proteomes. 2018. PMID: 29385081 Free PMC article.

9

The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

Muth T, Behne A, Heyer R, Kohrs F, Benndorf D, Hoffmann M, Lehtevä M, Reichl U, Martens L, Rapp E. Muth T, et al. J Proteome Res. 2015 Mar 6;14(3):1557-65. doi: 10.1021/pr501246w. Epub 2015 Feb 23. J Proteome Res. 2015. PMID: 25660940

10

Colonic metaproteomic signatures of active bacteria and the host in obesity.

Kolmeder CA, Ritari J, Verdam FJ, Muth T, Keskitalo S, Varjosalo M, Fuentes S, Greve JW, Buurman WA, Reichl U, Rapp E, Martens L, Palva A, Salonen A, Rensen SS, de Vos WM. Kolmeder CA, et al. Among authors: muth t. Proteomics. 2015 Oct;15(20):3544-52. doi: 10.1002/pmic.201500049. Epub 2015 Sep 11. Proteomics. 2015. PMID: 26255997

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