Douglas J - Search Results

1

Domain acquisition by class I aminoacyl-tRNA synthetase urzymes coordinated the catalytic functions of HVGH and KMSKS motifs.

Tang GQ, Elder JJH, Douglas J, Carter CW. Tang GQ, et al. Among authors: douglas j. Nucleic Acids Res. 2023 Aug 25;51(15):8070-8084. doi: 10.1093/nar/gkad590. Nucleic Acids Res. 2023. PMID: 37470821 Free PMC article.

2

Enzymic recognition of amino acids drove the evolution of primordial genetic codes.

Douglas J, Bouckaert R, Carter CW Jr, Wills PR. Douglas J, et al. Nucleic Acids Res. 2024 Jan 25;52(2):558-571. doi: 10.1093/nar/gkad1160. Nucleic Acids Res. 2024. PMID: 38048305 Free PMC article.

3

Primordial aminoacyl-tRNA synthetases preferred minihelices to full-length tRNA.

Tang GQ, Hu H, Douglas J, Carter CW Jr. Tang GQ, et al. Among authors: douglas j. Nucleic Acids Res. 2024 Jul 8;52(12):7096-7111. doi: 10.1093/nar/gkae417. Nucleic Acids Res. 2024. PMID: 38783009 Free PMC article.

4

AARS Online: A collaborative database on the structure, function, and evolution of the aminoacyl-tRNA synthetases.

Douglas J, Cui H, Perona JJ, Vargas-Rodriguez O, Tyynismaa H, Carreño CA, Ling J, Ribas de Pouplana L, Yang XL, Ibba M, Becker H, Fischer F, Sissler M, Carter CW Jr, Wills PR. Douglas J, et al. IUBMB Life. 2024 Sep 9. doi: 10.1002/iub.2911. Online ahead of print. IUBMB Life. 2024. PMID: 39247978 Free article.

5

Coexisting bacterial aminoacyl-tRNA synthetase paralogs exhibit distinct phylogenetic backgrounds and functional compatibility with Escherichia coli.

Radecki AA, Fantasia-Davis A, Maldonado JS, Mann JW, Sepulveda-Camacho S, Morosky P, Douglas J, Vargas-Rodriguez O. Radecki AA, et al. Among authors: douglas j. IUBMB Life. 2024 Oct 17. doi: 10.1002/iub.2920. Online ahead of print. IUBMB Life. 2024. PMID: 39417753

6

UglyTrees: a browser-based multispecies coalescent tree visualizer.

Douglas J. Douglas J. Bioinformatics. 2021 Apr 19;37(2):268-269. doi: 10.1093/bioinformatics/btaa679. Bioinformatics. 2021. PMID: 32717041 Free PMC article.

7

Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene.

Douglas J, Drummond AJ, Kingston RL. Douglas J, et al. Virus Evol. 2021 Mar 27;7(1):veab028. doi: 10.1093/ve/veab028. eCollection 2021 Jan. Virus Evol. 2021. PMID: 34141448 Free PMC article. Review.

8

Quantitatively defining species boundaries with more efficiency and more biological realism.

Douglas J, Bouckaert R. Douglas J, et al. Commun Biol. 2022 Jul 28;5(1):755. doi: 10.1038/s42003-022-03723-z. Commun Biol. 2022. PMID: 35902726 Free PMC article.

9

Bayesian inference and comparison of stochastic transcription elongation models.

Douglas J, Kingston R, Drummond AJ. Douglas J, et al. PLoS Comput Biol. 2020 Feb 14;16(2):e1006717. doi: 10.1371/journal.pcbi.1006717. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32059006 Free PMC article.

10

Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model.

Douglas J, Zhang R, Bouckaert R. Douglas J, et al. PLoS Comput Biol. 2021 Feb 2;17(2):e1008322. doi: 10.1371/journal.pcbi.1008322. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33529184 Free PMC article.

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