Ellington AD - Search Results

1

Peptide Macrocyclization Guided by Reversible Covalent Templating.

Maier JM, Valenzuela SA, van der Stok A, Menta AK, Shimizu Y, Ngo PH, Ellington AD, Anslyn EV. Maier JM, et al. Among authors: ellington ad. Chemistry. 2023 Oct 13;29(57):e202301949. doi: 10.1002/chem.202301949. Epub 2023 Sep 8. Chemistry. 2023. PMID: 37475574 Free PMC article.

2

Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches.

Kosonocky CW, Feller AL, Wilke CO, Ellington AD. Kosonocky CW, et al. Among authors: ellington ad. Patterns (N Y). 2023 Oct 30;4(12):100865. doi: 10.1016/j.patter.2023.100865. eCollection 2023 Dec 8. Patterns (N Y). 2023. PMID: 38106612 Free PMC article.

3

Parallel molecular computation on digital data stored in DNA.

Wang B, Wang SS, Chalk C, Ellington AD, Soloveichik D. Wang B, et al. Among authors: ellington ad. Proc Natl Acad Sci U S A. 2023 Sep 12;120(37):e2217330120. doi: 10.1073/pnas.2217330120. Epub 2023 Sep 5. Proc Natl Acad Sci U S A. 2023. PMID: 37669382 Free PMC article.

4

Kinetics of elementary steps in loop-mediated isothermal amplification (LAMP) show that strand invasion during initiation is rate-limiting.

Dangerfield TL, Paik I, Bhadra S, Johnson KA, Ellington AD. Dangerfield TL, et al. Among authors: ellington ad. Nucleic Acids Res. 2023 Jan 11;51(1):488-499. doi: 10.1093/nar/gkac1221. Nucleic Acids Res. 2023. PMID: 36583345 Free PMC article.

5

Analysis of macerated ticks using Boolean logic gating colorimetric isothermal nucleic acid assays for Lyme Borrelia and Ixodes scapularis ticks.

Bhadra S, Esteve-Gasent MD, Ellington AD. Bhadra S, et al. Among authors: ellington ad. Sci Rep. 2023 Jul 15;13(1):11439. doi: 10.1038/s41598-023-38452-8. Sci Rep. 2023. PMID: 37454160 Free PMC article.

6

Using machine learning to predict the effects and consequences of mutations in proteins.

Diaz DJ, Kulikova AV, Ellington AD, Wilke CO. Diaz DJ, et al. Among authors: ellington ad. Curr Opin Struct Biol. 2023 Feb;78:102518. doi: 10.1016/j.sbi.2022.102518. Epub 2023 Jan 3. Curr Opin Struct Biol. 2023. PMID: 36603229 Free PMC article. Review.

7

Engineering Geobacter pili to produce metal:organic filaments.

Szmuc E, Walker DJF, Kireev D, Akinwande D, Lovley DR, Keitz B, Ellington A. Szmuc E, et al. Biosens Bioelectron. 2023 Feb 15;222:114993. doi: 10.1016/j.bios.2022.114993. Epub 2022 Dec 6. Biosens Bioelectron. 2023. PMID: 36525710

8

Supercharged fluorescent proteins detect lanthanides via direct antennae signaling.

Huang KY, Cardenas L, Ellington AD, Walker DJF. Huang KY, et al. Among authors: ellington ad. Nat Commun. 2024 Oct 24;15(1):9200. doi: 10.1038/s41467-024-53106-7. Nat Commun. 2024. PMID: 39448572 Free PMC article.

9

Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes.

Kar S, Gardner EC, Javanmardi K, Boutz DR, Shroff R, Horton AP, Segall-Shapiro TH, Ellington AD, Gollihar J. Kar S, et al. Among authors: ellington ad. bioRxiv [Preprint]. 2024 Sep 25:2024.09.25.614978. doi: 10.1101/2024.09.25.614978. bioRxiv. 2024. PMID: 39386662 Free PMC article. Preprint.

10

Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations.

Diaz DJ, Gong C, Ouyang-Zhang J, Loy JM, Wells J, Yang D, Ellington AD, Dimakis AG, Klivans AR. Diaz DJ, et al. Among authors: ellington ad. Nat Commun. 2024 Jul 23;15(1):6170. doi: 10.1038/s41467-024-49780-2. Nat Commun. 2024. PMID: 39043654 Free PMC article.

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