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Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering.
Nat Commun. 2023 Aug 1;14(1):4618. doi: 10.1038/s41467-023-40068-5.
Nat Commun. 2023.
PMID: 37528072
Free PMC article.
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).
Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP.
Jain S, et al.
Nat Cell Biol. 2023 Aug;25(8):1089-1100. doi: 10.1038/s41556-023-01194-w. Epub 2023 Jul 19.
Nat Cell Biol. 2023.
PMID: 37468756
Free PMC article.
Review.
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Automated classification of cellular expression in multiplexed imaging data with Nimbus.
Rumberger JL, Greenwald NF, Ranek JS, Boonrat P, Walker C, Franzen J, Varra SR, Kong A, Sowers C, Liu CC, Averbukh I, Piyadasa H, Vanguri R, Nederlof I, Wang XJ, Van Valen D, Kok M, Hollmann TJ, Kainmueller D, Angelo M.
Rumberger JL, et al. Among authors: varra sr.
bioRxiv [Preprint]. 2024 Jun 3:2024.06.02.597062. doi: 10.1101/2024.06.02.597062.
bioRxiv. 2024.
PMID: 38895405
Free PMC article.
Preprint.
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Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).
Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP.
Jain S, et al.
Nat Cell Biol. 2024 May;26(5):839. doi: 10.1038/s41556-024-01384-0.
Nat Cell Biol. 2024.
PMID: 38429479
No abstract available.
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