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The UCSC Genome Browser database: 2024 update.
Raney BJ, Barber GP, Benet-Pagès A, Casper J, Clawson H, Cline MS, Diekhans M, Fischer C, Navarro Gonzalez J, Hickey G, Hinrichs AS, Kuhn RM, Lee BT, Lee CM, Le Mercier P, Miga KH, Nassar LR, Nejad P, Paten B, Perez G, Schmelter D, Speir ML, Wick BD, Zweig AS, Haussler D, Kent WJ, Haeussler M. Raney BJ, et al. Among authors: schmelter d. Nucleic Acids Res. 2024 Jan 5;52(D1):D1082-D1088. doi: 10.1093/nar/gkad987. Nucleic Acids Res. 2024. PMID: 37953330 Free PMC article.
UCSC Genome Browser enters 20th year.
Lee CM, Barber GP, Casper J, Clawson H, Diekhans M, Gonzalez JN, Hinrichs AS, Lee BT, Nassar LR, Powell CC, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Zweig AS, Haussler D, Haeussler M, Kuhn RM, Kent WJ. Lee CM, et al. Among authors: schmelter d. Nucleic Acids Res. 2020 Jan 8;48(D1):D756-D761. doi: 10.1093/nar/gkz1012. Nucleic Acids Res. 2020. PMID: 31691824 Free PMC article.
The UCSC Genome Browser database: 2021 update.
Navarro Gonzalez J, Zweig AS, Speir ML, Schmelter D, Rosenbloom KR, Raney BJ, Powell CC, Nassar LR, Maulding ND, Lee CM, Lee BT, Hinrichs AS, Fyfe AC, Fernandes JD, Diekhans M, Clawson H, Casper J, Benet-Pagès A, Barber GP, Haussler D, Kuhn RM, Haeussler M, Kent WJ. Navarro Gonzalez J, et al. Among authors: schmelter d. Nucleic Acids Res. 2021 Jan 8;49(D1):D1046-D1057. doi: 10.1093/nar/gkaa1070. Nucleic Acids Res. 2021. PMID: 33221922 Free PMC article.
The UCSC Genome Browser database: 2022 update.
Lee BT, Barber GP, Benet-Pagès A, Casper J, Clawson H, Diekhans M, Fischer C, Gonzalez JN, Hinrichs AS, Lee CM, Muthuraman P, Nassar LR, Nguy B, Pereira T, Perez G, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Wick BD, Zweig AS, Haussler D, Kuhn RM, Haeussler M, Kent WJ. Lee BT, et al. Among authors: schmelter d. Nucleic Acids Res. 2022 Jan 7;50(D1):D1115-D1122. doi: 10.1093/nar/gkab959. Nucleic Acids Res. 2022. PMID: 34718705 Free PMC article.
Variant interpretation: UCSC Genome Browser Recommended Track Sets.
Benet-Pagès A, Rosenbloom KR, Nassar LR, Lee CM, Raney BJ, Clawson H, Schmelter D, Casper J, Gonzalez JN, Perez G, Lee BT, Zweig AS, Kent WJ, Haeussler M, Kuhn RM. Benet-Pagès A, et al. Among authors: schmelter d. Hum Mutat. 2022 Aug;43(8):998-1011. doi: 10.1002/humu.24335. Epub 2022 Feb 7. Hum Mutat. 2022. PMID: 35088925 Free PMC article.
The UCSC Genome Browser database: 2023 update.
Nassar LR, Barber GP, Benet-Pagès A, Casper J, Clawson H, Diekhans M, Fischer C, Gonzalez JN, Hinrichs AS, Lee BT, Lee CM, Muthuraman P, Nguy B, Pereira T, Nejad P, Perez G, Raney BJ, Schmelter D, Speir ML, Wick BD, Zweig AS, Haussler D, Kuhn RM, Haeussler M, Kent WJ. Nassar LR, et al. Among authors: schmelter d. Nucleic Acids Res. 2023 Jan 6;51(D1):D1188-D1195. doi: 10.1093/nar/gkac1072. Nucleic Acids Res. 2023. PMID: 36420891 Free PMC article.
The UCSC SARS-CoV-2 Genome Browser.
Fernandes JD, Hinrichs AS, Clawson H, Gonzalez JN, Lee BT, Nassar LR, Raney BJ, Rosenbloom KR, Nerli S, Rao AA, Schmelter D, Fyfe A, Maulding N, Zweig AS, Lowe TM, Ares M Jr, Corbet-Detig R, Kent WJ, Haussler D, Haeussler M. Fernandes JD, et al. Among authors: schmelter d. Nat Genet. 2020 Oct;52(10):991-998. doi: 10.1038/s41588-020-0700-8. Nat Genet. 2020. PMID: 32908258 Free PMC article.
GenArk: towards a million UCSC genome browsers.
Clawson H, Lee BT, Raney BJ, Barber GP, Casper J, Diekhans M, Fischer C, Gonzalez JN, Hinrichs AS, Lee CM, Nassar LR, Perez G, Wick B, Schmelter D, Speir ML, Armstrong J, Zweig AS, Kuhn RM, Kirilenko BM, Hiller M, Haussler D, Kent WJ, Haeussler M. Clawson H, et al. Among authors: schmelter d. Genome Biol. 2023 Oct 2;24(1):217. doi: 10.1186/s13059-023-03057-x. Genome Biol. 2023. PMID: 37784172 Free PMC article.
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
Castro-Mondragon JA, Riudavets-Puig R, Rauluseviciute I, Lemma RB, Turchi L, Blanc-Mathieu R, Lucas J, Boddie P, Khan A, Manosalva Pérez N, Fornes O, Leung TY, Aguirre A, Hammal F, Schmelter D, Baranasic D, Ballester B, Sandelin A, Lenhard B, Vandepoele K, Wasserman WW, Parcy F, Mathelier A. Castro-Mondragon JA, et al. Among authors: schmelter d. Nucleic Acids Res. 2022 Jan 7;50(D1):D165-D173. doi: 10.1093/nar/gkab1113. Nucleic Acids Res. 2022. PMID: 34850907 Free PMC article.
GenArk: Towards a million UCSC Genome Browsers.
Clawson H, Lee BT, Raney BJ, Barber GP, Casper J, Diekhans M, Fischer C, Gonzalez JN, Hinrichs AS, Lee CM, Nassar LR, Perez G, Wick B, Schmelter D, Speir ML, Armstrong J, Zweig AS, Kuhn RM, Kirilenko BM, Hiller M, Haussler D, Kent WJ, Haeussler M. Clawson H, et al. Among authors: schmelter d. Res Sq [Preprint]. 2023 Apr 3:rs.3.rs-2697398. doi: 10.21203/rs.3.rs-2697398/v1. Res Sq. 2023. Update in: Genome Biol. 2023 Oct 2;24(1):217. doi: 10.1186/s13059-023-03057-x. PMID: 37066427 Free PMC article. Updated. Preprint.
14 results