Cahan P - Search Results

1

Organogenetic transcriptomes of the Drosophila embryo at single cell resolution.

Peng D, Jackson D, Palicha B, Kernfeld E, Laughner N, Shoemaker A, Celniker SE, Loganathan R, Cahan P, Andrew DJ. Peng D, et al. Among authors: cahan p. Development. 2024 Jan 15;151(2):dev202097. doi: 10.1242/dev.202097. Epub 2024 Jan 18. Development. 2024. PMID: 38174902 Free PMC article.

2

Understanding development and stem cells using single cell-based analyses of gene expression.

Kumar P, Tan Y, Cahan P. Kumar P, et al. Among authors: cahan p. Development. 2017 Jan 1;144(1):17-32. doi: 10.1242/dev.133058. Development. 2017. PMID: 28049689 Free PMC article. Review.

3

A single cell transcriptional atlas of early synovial joint development.

Bian Q, Cheng YH, Wilson JP, Su EY, Kim DW, Wang H, Yoo S, Blackshaw S, Cahan P. Bian Q, et al. Among authors: cahan p. Development. 2020 Jul 20;147(14):dev185777. doi: 10.1242/dev.185777. Development. 2020. PMID: 32580935 Free PMC article.

4

Evaluating the transcriptional fidelity of cancer models.

Peng D, Gleyzer R, Tai WH, Kumar P, Bian Q, Isaacs B, da Rocha EL, Cai S, DiNapoli K, Huang FW, Cahan P. Peng D, et al. Among authors: cahan p. Genome Med. 2021 Apr 29;13(1):73. doi: 10.1186/s13073-021-00888-w. Genome Med. 2021. PMID: 33926541 Free PMC article.

5

A systematic comparison of computational methods for expression forecasting.

Kernfeld E, Yang Y, Weinstock J, Battle A, Cahan P. Kernfeld E, et al. Among authors: cahan p. bioRxiv [Preprint]. 2024 Oct 1:2023.07.28.551039. doi: 10.1101/2023.07.28.551039. bioRxiv. 2024. PMID: 37577640 Free PMC article. Preprint.

6

OneSC: A computational platform for recapitulating cell state transitions.

Peng D, Cahan P. Peng D, et al. Among authors: cahan p. bioRxiv [Preprint]. 2024 Jun 3:2024.05.31.596831. doi: 10.1101/2024.05.31.596831. bioRxiv. 2024. PMID: 38895453 Free PMC article. Preprint.

7

Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells.

Su EY, Fread K, Goggin S, Zunder ER, Cahan P. Su EY, et al. Among authors: cahan p. Sci Data. 2024 May 30;11(1):559. doi: 10.1038/s41597-024-03399-6. Sci Data. 2024. PMID: 38816402 Free PMC article.

8

A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo.

Spangler A, Su EY, Craft AM, Cahan P. Spangler A, et al. Among authors: cahan p. Stem Cell Res. 2018 Aug;31:201-215. doi: 10.1016/j.scr.2018.07.022. Epub 2018 Jul 29. Stem Cell Res. 2018. PMID: 30118958 Free PMC article.

9

SingleCellNet: A Computational Tool to Classify Single Cell RNA-Seq Data Across Platforms and Across Species.

Tan Y, Cahan P. Tan Y, et al. Among authors: cahan p. Cell Syst. 2019 Aug 28;9(2):207-213.e2. doi: 10.1016/j.cels.2019.06.004. Epub 2019 Jul 31. Cell Syst. 2019. PMID: 31377170 Free PMC article.

10

Computational reconstruction of the signalling networks surrounding implanted biomaterials from single-cell transcriptomics.

Cherry C, Maestas DR, Han J, Andorko JI, Cahan P, Fertig EJ, Garmire LX, Elisseeff JH. Cherry C, et al. Among authors: cahan p. Nat Biomed Eng. 2021 Oct;5(10):1228-1238. doi: 10.1038/s41551-021-00770-5. Epub 2021 Aug 2. Nat Biomed Eng. 2021. PMID: 34341534 Free PMC article.

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