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ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondii.
Swapna LS, Stevens GC, Sardinha-Silva A, Hu LZ, Brand V, Fusca DD, Wan C, Xiong X, Boyle JP, Grigg ME, Emili A, Parkinson J. Swapna LS, et al. PLoS Comput Biol. 2024 Jun 20;20(6):e1012208. doi: 10.1371/journal.pcbi.1012208. eCollection 2024 Jun. PLoS Comput Biol. 2024. PMID: 38900844 Free PMC article.
Genomics of apicomplexan parasites.
Swapna LS, Parkinson J. Swapna LS, et al. Crit Rev Biochem Mol Biol. 2017 Jun;52(3):254-273. doi: 10.1080/10409238.2017.1290043. Epub 2017 Feb 22. Crit Rev Biochem Mol Biol. 2017. PMID: 28276701 Free PMC article. Review.
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.
Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, Sibley LD. Lorenzi H, et al. Among authors: swapna ls. Nat Commun. 2016 Jan 7;7:10147. doi: 10.1038/ncomms10147. Nat Commun. 2016. PMID: 26738725 Free PMC article.
Systems-based analysis of the Sarcocystis neurona genome identifies pathways that contribute to a heteroxenous life cycle.
Blazejewski T, Nursimulu N, Pszenny V, Dangoudoubiyam S, Namasivayam S, Chiasson MA, Chessman K, Tonkin M, Swapna LS, Hung SS, Bridgers J, Ricklefs SM, Boulanger MJ, Dubey JP, Porcella SF, Kissinger JC, Howe DK, Grigg ME, Parkinson J. Blazejewski T, et al. Among authors: swapna ls. mBio. 2015 Feb 10;6(1):e02445-14. doi: 10.1128/mBio.02445-14. mBio. 2015. PMID: 25670772 Free PMC article.
The genome of Onchocerca volvulus, agent of river blindness.
Cotton JA, Bennuru S, Grote A, Harsha B, Tracey A, Beech R, Doyle SR, Dunn M, Hotopp JC, Holroyd N, Kikuchi T, Lambert O, Mhashilkar A, Mutowo P, Nursimulu N, Ribeiro JM, Rogers MB, Stanley E, Swapna LS, Tsai IJ, Unnasch TR, Voronin D, Parkinson J, Nutman TB, Ghedin E, Berriman M, Lustigman S. Cotton JA, et al. Among authors: swapna ls. Nat Microbiol. 2016 Nov 21;2:16216. doi: 10.1038/nmicrobiol.2016.216. Nat Microbiol. 2016. PMID: 27869790 Free PMC article.
The role of palmitoylation for protein recruitment to the inner membrane complex of the malaria parasite.
Wetzel J, Herrmann S, Swapna LS, Prusty D, John Peter AT, Kono M, Saini S, Nellimarla S, Wong TW, Wilcke L, Ramsay O, Cabrera A, Biller L, Heincke D, Mossman K, Spielmann T, Ungermann C, Parkinson J, Gilberger TW. Wetzel J, et al. Among authors: swapna ls. J Biol Chem. 2015 Jan 16;290(3):1712-28. doi: 10.1074/jbc.M114.598094. Epub 2014 Nov 25. J Biol Chem. 2015. PMID: 25425642 Free PMC article.
Comparative genomics of the major parasitic worms.
International Helminth Genomes Consortium. International Helminth Genomes Consortium. Nat Genet. 2019 Jan;51(1):163-174. doi: 10.1038/s41588-018-0262-1. Epub 2018 Nov 5. Nat Genet. 2019. PMID: 30397333 Free PMC article.
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