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Optimal linear ensemble of binary classifiers.
Ahsen ME, Vogel R, Stolovitzky G. Ahsen ME, et al. Among authors: vogel r. Bioinform Adv. 2024 Jun 25;4(1):vbae093. doi: 10.1093/bioadv/vbae093. eCollection 2024. Bioinform Adv. 2024. PMID: 39011276 Free PMC article.
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium; Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J. Menden MP, et al. Among authors: vogel r. Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2. Nat Commun. 2019. PMID: 31209238 Free PMC article.
Noise-driven causal inference in biomolecular networks.
Prill RJ, Vogel R, Cecchi GA, Altan-Bonnet G, Stolovitzky G. Prill RJ, et al. Among authors: vogel r. PLoS One. 2015 Jun 1;10(6):e0125777. doi: 10.1371/journal.pone.0125777. eCollection 2015. PLoS One. 2015. PMID: 26030907 Free PMC article.
A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection.
Fourati S, Talla A, Mahmoudian M, Burkhart JG, Klén R, Henao R, Yu T, Aydın Z, Yeung KY, Ahsen ME, Almugbel R, Jahandideh S, Liang X, Nordling TEM, Shiga M, Stanescu A, Vogel R; Respiratory Viral DREAM Challenge Consortium; Pandey G, Chiu C, McClain MT, Woods CW, Ginsburg GS, Elo LL, Tsalik EL, Mangravite LM, Sieberts SK. Fourati S, et al. Among authors: vogel r. Nat Commun. 2018 Oct 24;9(1):4418. doi: 10.1038/s41467-018-06735-8. Nat Commun. 2018. PMID: 30356117 Free PMC article.
Critical slowing down in biochemical networks with feedback.
Byrd TA, Erez A, Vogel RM, Peterson C, Vennettilli M, Altan-Bonnet G, Mugler A. Byrd TA, et al. Phys Rev E. 2019 Aug;100(2-1):022415. doi: 10.1103/PhysRevE.100.022415. Phys Rev E. 2019. PMID: 31574667 Free PMC article.
1,597 results