Matsen FA 4th - Search Results

1

Learning antibody sequence constraints from allelic inclusion.

Jagota M, Hsu C, Mazumder T, Sung K, DeWitt WS, Listgarten J, Matsen FA 4th, Ye CJ, Song YS. Jagota M, et al. Among authors: matsen fa 4th. bioRxiv [Preprint]. 2024 Oct 25:2024.10.22.619760. doi: 10.1101/2024.10.22.619760. bioRxiv. 2024. PMID: 39484623 Free PMC article. Preprint.

2

Statistical analysis of repertoire data demonstrates the influence of microhomology in V(D)J recombination.

Russell ML, Trofimov A, Bradley P, Matsen FA 4th. Russell ML, et al. Among authors: matsen fa 4th. bioRxiv [Preprint]. 2024 Oct 18:2024.10.16.618753. doi: 10.1101/2024.10.16.618753. bioRxiv. 2024. PMID: 39464162 Free PMC article. Preprint.

3

Deep mutational scanning of CYP2C19 in human cells reveals a substrate specificity-abundance tradeoff.

Boyle GE, Sitko KA, Galloway JG, Haddox HK, Bianchi AH, Dixon A, Wheelock MK, Vandi AJ, Wang ZR, Thomson RES, Garge RK, Rettie AE, Rubin AF, Geck RC, Gillam EMJ, DeWitt WS, Matsen FA 4th, Fowler DM. Boyle GE, et al. Among authors: matsen fa 4th. Genetics. 2024 Nov 6;228(3):iyae156. doi: 10.1093/genetics/iyae156. Genetics. 2024. PMID: 39319420

4

On the importance of assessing topological convergence in Bayesian phylogenetic inference.

Brusselmans M, Carvalho LM, Hong SL, Gao J, Matsen FA 4th, Rambaut A, Lemey P, Suchard MA, Dudas G, Baele G. Brusselmans M, et al. Among authors: matsen fa 4th. ArXiv [Preprint]. 2024 Aug 19:arXiv:2402.11657v2. ArXiv. 2024. Update in: Virus Evol. 2024 Oct 15;10(1):veae081. doi: 10.1093/ve/veae081. PMID: 39253641 Free PMC article. Updated. Preprint.

5

Optics-free reconstruction of 2D images via DNA barcode proximity graphs.

Liao H, Kottapalli S, Huang Y, Chaw M, Gehring J, Waltner O, Phung-Rojas M, Daza RM, Matsen FA 4th, Trapnell C, Shendure J, Srivatsan S. Liao H, et al. Among authors: matsen fa 4th. bioRxiv [Preprint]. 2024 Aug 8:2024.08.06.606834. doi: 10.1101/2024.08.06.606834. bioRxiv. 2024. PMID: 39149271 Free PMC article. Preprint.

6

Variational Supertrees for Bayesian Phylogenetics.

Karcher MD, Zhang C, Matsen FA 4th. Karcher MD, et al. Among authors: matsen fa 4th. Bull Math Biol. 2024 Aug 5;86(9):114. doi: 10.1007/s11538-024-01338-5. Bull Math Biol. 2024. PMID: 39101994 Free PMC article.

7

The S2 subunit of spike encodes diverse targets for functional antibody responses to SARS-CoV-2.

Guenthoer J, Garrett ME, Lilly M, Depierreux DM, Ruiz F, Chi M, Stoddard CI, Chohan V, Yaffe ZA, Sung K, Ralph D, Chu HY, Matsen FA 4th, Overbaugh J. Guenthoer J, et al. Among authors: matsen fa 4th. PLoS Pathog. 2024 Aug 2;20(8):e1012383. doi: 10.1371/journal.ppat.1012383. eCollection 2024 Aug. PLoS Pathog. 2024. PMID: 39093891 Free PMC article.

8

Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin.

Welsh FC, Eguia RT, Lee JM, Haddox HK, Galloway J, Van Vinh Chau N, Loes AN, Huddleston J, Yu TC, Quynh Le M, Nhat NTD, Thi Le Thanh N, Greninger AL, Chu HY, Englund JA, Bedford T, Matsen FA 4th, Boni MF, Bloom JD. Welsh FC, et al. Among authors: matsen fa 4th. Cell Host Microbe. 2024 Aug 14;32(8):1397-1411.e11. doi: 10.1016/j.chom.2024.06.015. Epub 2024 Jul 19. Cell Host Microbe. 2024. PMID: 39032493 Free article.

9

Deep mutational scanning reveals functional constraints and antibody-escape potential of Lassa virus glycoprotein complex.

Carr CR, Crawford KHD, Murphy M, Galloway JG, Haddox HK, Matsen FA 4th, Andersen KG, King NP, Bloom JD. Carr CR, et al. Among authors: matsen fa 4th. Immunity. 2024 Sep 10;57(9):2061-2076.e11. doi: 10.1016/j.immuni.2024.06.013. Epub 2024 Jul 15. Immunity. 2024. PMID: 39013466 Free article.

10

How Trustworthy Is Your Tree? Bayesian Phylogenetic Effective Sample Size Through the Lens of Monte Carlo Error.

Magee A, Karcher M, Matsen FA 4th, Minin VM. Magee A, et al. Among authors: matsen fa 4th. Bayesian Anal. 2024 Jun;19(2):565-593. doi: 10.1214/22-ba1339. Epub 2024 Apr 9. Bayesian Anal. 2024. PMID: 38665694 Free PMC article.

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