Gresham D - Search Results

1

Prokaryote communities along a source-to-estuary river continuum in the Brazilian Atlantic Forest.

de Santana CO, Spealman P, Oliveira E, Gresham D, de Jesus T, Chinalia F. de Santana CO, et al. Among authors: gresham d. PeerJ. 2024 Aug 13;12:e17900. doi: 10.7717/peerj.17900. eCollection 2024. PeerJ. 2024. PMID: 39157765 Free PMC article.

2

Large-scale differences in diversity and functional adaptations of prokaryotic communities from conserved and anthropogenically impacted mangrove sediments in a tropical estuary.

De Santana CO, Spealman P, Melo V, Gresham D, de Jesus T, Oliveira E, Chinalia FA. De Santana CO, et al. Among authors: gresham d. PeerJ. 2021 Sep 23;9:e12229. doi: 10.7717/peerj.12229. eCollection 2021. PeerJ. 2021. PMID: 34631324 Free PMC article.

3

Multilevel gene expression changes in lineages containing adaptive copy number variants.

Spealman P, de Santana C, De T, Gresham D. Spealman P, et al. Among authors: gresham d. bioRxiv [Preprint]. 2024 Jul 9:2023.10.20.563336. doi: 10.1101/2023.10.20.563336. bioRxiv. 2024. PMID: 37961325 Free PMC article. Preprint.

4

Inverted duplicate DNA sequences increase translocation rates through sequencing nanopores resulting in reduced base calling accuracy.

Spealman P, Burrell J, Gresham D. Spealman P, et al. Among authors: gresham d. Nucleic Acids Res. 2020 May 21;48(9):4940-4945. doi: 10.1093/nar/gkaa206. Nucleic Acids Res. 2020. PMID: 32255181 Free PMC article.

5

Metagenomes from Soils along an Agricultural Transect in Ulster County, New York.

de Santana CO, Spealman P, Gresham D, Perron GG. de Santana CO, et al. Among authors: gresham d. Microbiol Resour Announc. 2023 Mar 16;12(3):e0101522. doi: 10.1128/mra.01015-22. Epub 2023 Feb 13. Microbiol Resour Announc. 2023. PMID: 36779724 Free PMC article.

6

Complex Genomic Rearrangements following Selection in a Glutamine-Limited Medium over Hundreds of Generations.

Spealman P, Avecilla G, Matthews J, Suresh I, Gresham D. Spealman P, et al. Among authors: gresham d. Microbiol Resour Announc. 2022 Nov 17;11(11):e0072922. doi: 10.1128/mra.00729-22. Epub 2022 Oct 27. Microbiol Resour Announc. 2022. PMID: 36301109 Free PMC article.

7

Best Practices in Microbial Experimental Evolution: Using Reporters and Long-Read Sequencing to Identify Copy Number Variation in Experimental Evolution.

Spealman P, De T, Chuong JN, Gresham D. Spealman P, et al. Among authors: gresham d. J Mol Evol. 2023 Jun;91(3):356-368. doi: 10.1007/s00239-023-10102-7. Epub 2023 Apr 3. J Mol Evol. 2023. PMID: 37012421 Free PMC article. Review.

8

Single-cell copy number variant detection reveals the dynamics and diversity of adaptation.

Lauer S, Avecilla G, Spealman P, Sethia G, Brandt N, Levy SF, Gresham D. Lauer S, et al. Among authors: gresham d. PLoS Biol. 2018 Dec 18;16(12):e3000069. doi: 10.1371/journal.pbio.3000069. eCollection 2018 Dec. PLoS Biol. 2018. PMID: 30562346 Free PMC article.

9

Copy number variation alters local and global mutational tolerance.

Avecilla G, Spealman P, Matthews J, Caudal E, Schacherer J, Gresham D. Avecilla G, et al. Among authors: gresham d. Genome Res. 2023 Aug;33(8):1340-1353. doi: 10.1101/gr.277625.122. Epub 2023 Aug 31. Genome Res. 2023. PMID: 37652668 Free PMC article.

10

Incorporation of unique molecular identifiers in TruSeq adapters improves the accuracy of quantitative sequencing.

Hong J, Gresham D. Hong J, et al. Among authors: gresham d. Biotechniques. 2017 Nov 1;63(5):221-226. doi: 10.2144/000114608. Biotechniques. 2017. PMID: 29185922 Free PMC article.

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