Zacharias M - Search Results

1

Screening Privileged Alkyl Guanidinium Motifs under Host-Mimicking Conditions Reveals a Novel Antibiotic with an Unconventional Mode of Action.

Schum D, Elsen FAV, Ruddell S, Schorpp K, Junca H, Müsken M, Chen SY, Fiedler MK, Pickl T, Pieper DH, Hadian K, Zacharias M, Sieber SA. Schum D, et al. Among authors: zacharias m. JACS Au. 2024 Jul 16;4(8):3125-3134. doi: 10.1021/jacsau.4c00449. eCollection 2024 Aug 26. JACS Au. 2024. PMID: 39211621 Free PMC article.

2

A Chemical Proteomic Strategy Reveals Inhibitors of Lipoate Salvage in Bacteria and Parasites.

Dienemann JN, Chen SY, Hitzenberger M, Sievert ML, Hacker SM, Prigge ST, Zacharias M, Groll M, Sieber SA. Dienemann JN, et al. Among authors: zacharias m. Angew Chem Int Ed Engl. 2023 Aug 1;62(31):e202304533. doi: 10.1002/anie.202304533. Epub 2023 Jun 26. Angew Chem Int Ed Engl. 2023. PMID: 37249408 Free PMC article.

3

APP substrate ectodomain defines amyloid-β peptide length by restraining γ-secretase processivity and facilitating product release.

Koch M, Enzlein T, Chen SY, Petit D, Lismont S, Zacharias M, Hopf C, Chávez-Gutiérrez L. Koch M, et al. Among authors: zacharias m. EMBO J. 2023 Dec 1;42(23):e114372. doi: 10.15252/embj.2023114372. Epub 2023 Oct 18. EMBO J. 2023. PMID: 37853914 Free PMC article.

4

Advanced sampling simulations of coupled folding and binding of phage P22 N-peptide to boxB RNA.

Vollmers L, Zacharias M. Vollmers L, et al. Among authors: zacharias m. Biophys J. 2024 Oct 1;123(19):3463-3477. doi: 10.1016/j.bpj.2024.08.022. Epub 2024 Aug 28. Biophys J. 2024. PMID: 39210596 Free PMC article.

5

Benchmarking biomolecular force field-based Zn²⁺ for mono- and bimetallic ligand binding sites.

Melse O, Antes I, Kaila VRI, Zacharias M. Melse O, et al. Among authors: zacharias m. J Comput Chem. 2023 Mar 30;44(8):912-926. doi: 10.1002/jcc.27052. Epub 2022 Dec 9. J Comput Chem. 2023. PMID: 36495007

6

Rational design of glycosaminoglycan binding cyclic peptides using cPEPmatch.

Santini BL, Gaardløs M, Wyrzykowski D, Rothemund S, Penk A, Zacharias M, Samsonov SA. Santini BL, et al. Among authors: zacharias m. Comput Struct Biotechnol J. 2024 Jul 20;23:2985-2994. doi: 10.1016/j.csbj.2024.07.016. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39135886 Free PMC article.

7

cPEPmatch Webserver: A comprehensive tool and database to aid rational design of cyclic peptides for drug discovery.

Santini BL, Wendel S, Halbwedl N, Knipp A, Zacharias M. Santini BL, et al. Among authors: zacharias m. Comput Struct Biotechnol J. 2024 Aug 12;23:3155-3162. doi: 10.1016/j.csbj.2024.08.008. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39253058 Free PMC article.

8

Efficient and accurate calculation of proline cis/trans isomerization free energies from Hamiltonian replica exchange molecular dynamics simulations.

Kienlein M, Zacharias M, Reif MM. Kienlein M, et al. Among authors: zacharias m. Structure. 2023 Nov 2;31(11):1473-1484.e6. doi: 10.1016/j.str.2023.08.008. Epub 2023 Aug 31. Structure. 2023. PMID: 37657438 Free article.

9

Coupling of conformation and CPD damage in nucleosomal DNA.

Nayis A, Liebl K, Zacharias M. Nayis A, et al. Among authors: zacharias m. Biophys Chem. 2023 Sep;300:107050. doi: 10.1016/j.bpc.2023.107050. Epub 2023 Jun 5. Biophys Chem. 2023. PMID: 37327725

10

Design of cyclic peptides as novel inhibitors of ICOS/ICOSL interaction.

Abdel-Rahman SA, Santini BL, Calvo-Barreiro L, Zacharias M, Gabr M. Abdel-Rahman SA, et al. Among authors: zacharias m. Bioorg Med Chem Lett. 2024 Feb 1;99:129599. doi: 10.1016/j.bmcl.2024.129599. Epub 2024 Jan 5. Bioorg Med Chem Lett. 2024. PMID: 38185345

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