Ou YY - Search Results

1

Deciphering the Language of Protein-DNA Interactions: A Deep Learning Approach Combining Contextual Embeddings and Multi-Scale Sequence Modeling.

Liu YC, Lin YJ, Chang YY, Chuang CC, Ou YY. Liu YC, et al. Among authors: ou yy. J Mol Biol. 2024 Nov 15;436(22):168769. doi: 10.1016/j.jmb.2024.168769. Epub 2024 Aug 29. J Mol Biol. 2024. PMID: 39214282

2

Using Language Representation Learning Approach to Efficiently Identify Protein Complex Categories in Electron Transport Chain.

Nguyen TT, Le NQ, Ho QT, Phan DV, Ou YY. Nguyen TT, et al. Among authors: ou yy. Mol Inform. 2020 Oct;39(10):e2000033. doi: 10.1002/minf.202000033. Epub 2020 Jul 16. Mol Inform. 2020. PMID: 32598045

3

ActTRANS: Functional classification in active transport proteins based on transfer learning and contextual representations.

Taju SW, Shah SMA, Ou YY. Taju SW, et al. Among authors: ou yy. Comput Biol Chem. 2021 Aug;93:107537. doi: 10.1016/j.compbiolchem.2021.107537. Epub 2021 Jun 29. Comput Biol Chem. 2021. PMID: 34217007

4

Using k-mer embeddings learned from a Skip-gram based neural network for building a cross-species DNA N6-methyladenine site prediction model.

Nguyen TTD, Trinh VN, Le NQK, Ou YY. Nguyen TTD, et al. Among authors: ou yy. Plant Mol Biol. 2021 Dec;107(6):533-542. doi: 10.1007/s11103-021-01204-1. Epub 2021 Nov 29. Plant Mol Biol. 2021. PMID: 34843033

5

DeepPLM_mCNN: An approach for enhancing ion channel and ion transporter recognition by multi-window CNN based on features from pre-trained language models.

Le VT, Malik MS, Tseng YH, Lee YC, Huang CI, Ou YY. Le VT, et al. Among authors: ou yy. Comput Biol Chem. 2024 Jun;110:108055. doi: 10.1016/j.compbiolchem.2024.108055. Epub 2024 Mar 20. Comput Biol Chem. 2024. PMID: 38555810

6

ProtTrans and multi-window scanning convolutional neural networks for the prediction of protein-peptide interaction sites.

Le VT, Zhan ZJ, Vu TT, Malik MS, Ou YY. Le VT, et al. Among authors: ou yy. J Mol Graph Model. 2024 Jul;130:108777. doi: 10.1016/j.jmgm.2024.108777. Epub 2024 Apr 17. J Mol Graph Model. 2024. PMID: 38642500

7

MCNN_MC: Computational Prediction of Mitochondrial Carriers and Investigation of Bongkrekic Acid Toxicity Using Protein Language Models and Convolutional Neural Networks.

Malik MS, Chang YY, Liu YC, Le VT, Ou YY. Malik MS, et al. Among authors: ou yy. J Chem Inf Model. 2024 Aug 12. doi: 10.1021/acs.jcim.4c00961. Online ahead of print. J Chem Inf Model. 2024. PMID: 39133248

8

VesiMCNN: Using pre-trained protein language models and multiple window scanning convolutional neural networks to identify vesicular transport proteins.

Le VT, Tseng YH, Liu YC, Malik MS, Ou YY. Le VT, et al. Among authors: ou yy. Int J Biol Macromol. 2024 Sep 26;280(Pt 3):136048. doi: 10.1016/j.ijbiomac.2024.136048. Online ahead of print. Int J Biol Macromol. 2024. PMID: 39332561

9

DeepNeoAG: Neoantigen epitope prediction from melanoma antigens using a synergistic deep learning model combining protein language models and multi-window scanning convolutional neural networks.

Chuang CC, Liu YC, Ou YY. Chuang CC, et al. Among authors: ou yy. Int J Biol Macromol. 2024 Nov;281(Pt 1):136252. doi: 10.1016/j.ijbiomac.2024.136252. Epub 2024 Oct 2. Int J Biol Macromol. 2024. PMID: 39366619

10

Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins.

Le NQ, Ho QT, Ou YY. Le NQ, et al. Among authors: ou yy. J Comput Chem. 2017 Sep 5;38(23):2000-2006. doi: 10.1002/jcc.24842. Epub 2017 Jun 22. J Comput Chem. 2017. PMID: 28643394

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

72 results

Search Page

Filters