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Page 1
Spatial Deconvolution of Cell Types and Cell States at Scale Utilizing TACIT.
Huynh KLA, Tyc KM, Matuck BF, Easter QT, Pratapa A, Kumar NV, Pérez P, Kulchar RJ, Pranzatelli TJF, de Souza D, Weaver TM, Qu X, Soares Junior LAV, Dolhnokoff M, Kleiner DE, Hewitt SM, Ferraz da Silva LF, Rocha VG, Warner BM, Byrd KM, Liu J. Huynh KLA, et al. Among authors: pratapa a. Res Sq [Preprint]. 2024 Jun 27:rs.3.rs-4536158. doi: 10.21203/rs.3.rs-4536158/v1. Res Sq. 2024. PMID: 38978567 Free PMC article. Preprint.
Single-cell spatial multiomics reveals tumor microenvironment vulnerabilities in cancer resistance to immunotherapy.
Quek C, Pratapa A, Bai X, Al-Eryani G, Pires da Silva I, Mayer A, Bartonicek N, Harvey K, Maher NG, Conway JW, Kasalo RJ, Ben Cheikh B, Braubach O, Palendira U, Saw RPM, Stretch JR, Shannon KF, Menzies AM, Scolyer RA, Long GV, Swarbrick A, Wilmott JS. Quek C, et al. Among authors: pratapa a. Cell Rep. 2024 Jul 23;43(7):114392. doi: 10.1016/j.celrep.2024.114392. Epub 2024 Jun 29. Cell Rep. 2024. PMID: 38944836 Free article.
Spatial Deconvolution of Cell Types and Cell States at Scale Utilizing TACIT.
Huynh KLA, Tyc KM, Matuck BF, Easter QT, Pratapa A, Kumar NV, Pérez P, Kulchar R, Pranzatelli T, de Souza D, Weaver TM, Qu X, Valente Soares LA, Dolhnokoff M, Kleiner DE, Hewitt SM, da Silva LFF, Rocha VG, Warner BM, Byrd KM, Liu J. Huynh KLA, et al. Among authors: pratapa a. bioRxiv [Preprint]. 2024 Jun 3:2024.05.31.596861. doi: 10.1101/2024.05.31.596861. bioRxiv. 2024. PMID: 38895230 Free PMC article. Preprint.
Image-based cell phenotyping with deep learning.
Pratapa A, Doron M, Caicedo JC. Pratapa A, et al. Curr Opin Chem Biol. 2021 Dec;65:9-17. doi: 10.1016/j.cbpa.2021.04.001. Epub 2021 May 21. Curr Opin Chem Biol. 2021. PMID: 34023800 Review.
Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease.
Mason MJ, Schinke C, Eng CLP, Towfic F, Gruber F, Dervan A, White BS, Pratapa A, Guan Y, Chen H, Cui Y, Li B, Yu T, Chaibub Neto E, Mavrommatis K, Ortiz M, Lyzogubov V, Bisht K, Dai HY, Schmitz F, Flynt E, Dan Rozelle, Danziger SA, Ratushny A; Multiple Myeloma DREAM Consortium; Dalton WS, Goldschmidt H, Avet-Loiseau H, Samur M, Hayete B, Sonneveld P, Shain KH, Munshi N, Auclair D, Hose D, Morgan G, Trotter M, Bassett D, Goke J, Walker BA, Thakurta A, Guinney J. Mason MJ, et al. Among authors: pratapa a. Leukemia. 2020 Jul;34(7):1866-1874. doi: 10.1038/s41375-020-0742-z. Epub 2020 Feb 14. Leukemia. 2020. PMID: 32060406 Free PMC article.
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