Samsonov SA - Search Results

1

Structural Insights into Endostatin-Heparan Sulfate Interactions Using Modeling Approaches.

Uciechowska-Kaczmarzyk U, Frank M, Samsonov SA, Maszota-Zieleniak M. Uciechowska-Kaczmarzyk U, et al. Among authors: samsonov sa. Molecules. 2024 Aug 26;29(17):4040. doi: 10.3390/molecules29174040. Molecules. 2024. PMID: 39274888 Free PMC article.

2

Sulfated glycosaminoglycans exploit the conformational plasticity of bone morphogenetic protein-2 (BMP-2) and alter the interaction profile with its receptor.

Hintze V, Samsonov SA, Anselmi M, Moeller S, Becher J, Schnabelrauch M, Scharnweber D, Pisabarro MT. Hintze V, et al. Among authors: samsonov sa. Biomacromolecules. 2014 Aug 11;15(8):3083-92. doi: 10.1021/bm5006855. Epub 2014 Jul 16. Biomacromolecules. 2014. PMID: 25029480

3

Insights into the roles of charged residues in substrate binding and mode of action of mannuronan C-5 epimerase AlgE4.

Gaardløs M, Samsonov SA, Sletmoen M, Hjørnevik M, Sætrom GI, Tøndervik A, Aachmann FL. Gaardløs M, et al. Among authors: samsonov sa. Glycobiology. 2021 Dec 30;31(12):1616-1635. doi: 10.1093/glycob/cwab025. Glycobiology. 2021. PMID: 33822050

4

The effect of interleukin-8 truncations on its interactions with glycosaminoglycans.

Nordsieck K, Baumann L, Hintze V, Pisabarro MT, Schnabelrauch M, Beck-Sickinger AG, Samsonov SA. Nordsieck K, et al. Among authors: samsonov sa. Biopolymers. 2018 Aug;109(10):e23103. doi: 10.1002/bip.23103. Epub 2018 Jan 27. Biopolymers. 2018. PMID: 29377072

5

Computational Analysis of Solvent Inclusion in Docking Studies of Protein-Glycosaminoglycan Systems.

Samsonov SA. Samsonov SA. Methods Mol Biol. 2018;1762:445-454. doi: 10.1007/978-1-4939-7756-7_22. Methods Mol Biol. 2018. PMID: 29594785

6

Molecular interactions of the anticancer agent ellipticine with glycosaminoglycans by in silico analysis.

Zsila F, Samsonov SA. Zsila F, et al. Among authors: samsonov sa. Carbohydr Res. 2018 Jun 15;462:28-33. doi: 10.1016/j.carres.2018.03.014. Epub 2018 Apr 3. Carbohydr Res. 2018. PMID: 29655053

7

Molecular dynamics-based model of VEGF-A and its heparin interactions.

Uciechowska-Kaczmarzyk U, Babik S, Zsila F, Bojarski KK, Beke-Somfai T, Samsonov SA. Uciechowska-Kaczmarzyk U, et al. Among authors: samsonov sa. J Mol Graph Model. 2018 Jun;82:157-166. doi: 10.1016/j.jmgm.2018.04.015. Epub 2018 Apr 27. J Mol Graph Model. 2018. PMID: 29738889

8

Insights into the structure and dynamics of lysyl oxidase propeptide, a flexible protein with numerous partners.

Vallet SD, Miele AE, Uciechowska-Kaczmarzyk U, Liwo A, Duclos B, Samsonov SA, Ricard-Blum S. Vallet SD, et al. Among authors: samsonov sa. Sci Rep. 2018 Aug 6;8(1):11768. doi: 10.1038/s41598-018-30190-6. Sci Rep. 2018. PMID: 30082873 Free PMC article.

9

Molecular dynamics insights into protein-glycosaminoglycan systems from microsecond-scale simulations.

Bojarski KK, Sieradzan AK, Samsonov SA. Bojarski KK, et al. Among authors: samsonov sa. Biopolymers. 2019 Jul;110(7):e23252. doi: 10.1002/bip.23252. Epub 2019 Jan 22. Biopolymers. 2019. PMID: 30667535

10

Modeling large protein-glycosaminoglycan complexes using a fragment-based approach.

Samsonov SA, Zacharias M, Chauvot de Beauchene I. Samsonov SA, et al. J Comput Chem. 2019 May 30;40(14):1429-1439. doi: 10.1002/jcc.25797. Epub 2019 Feb 15. J Comput Chem. 2019. PMID: 30768805

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