Bitbol AF - Search Results

1

Impact of phylogeny on the inference of functional sectors from protein sequence data.

Dietler N, Abbara A, Choudhury S, Bitbol AF. Dietler N, et al. Among authors: bitbol af. PLoS Comput Biol. 2024 Sep 23;20(9):e1012091. doi: 10.1371/journal.pcbi.1012091. eCollection 2024 Sep. PLoS Comput Biol. 2024. PMID: 39312591 Free PMC article.

2

Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences.

Gerardos A, Dietler N, Bitbol AF. Gerardos A, et al. Among authors: bitbol af. PLoS Comput Biol. 2022 May 16;18(5):e1010147. doi: 10.1371/journal.pcbi.1010147. eCollection 2022 May. PLoS Comput Biol. 2022. PMID: 35576238 Free PMC article.

3

Impact of phylogeny on structural contact inference from protein sequence data.

Dietler N, Lupo U, Bitbol AF. Dietler N, et al. Among authors: bitbol af. J R Soc Interface. 2023 Feb;20(199):20220707. doi: 10.1098/rsif.2022.0707. Epub 2023 Feb 8. J R Soc Interface. 2023. PMID: 36751926 Free PMC article.

4

Mutant fate in spatially structured populations on graphs: Connecting models to experiments.

Abbara A, Pagani L, García-Pareja C, Bitbol AF. Abbara A, et al. Among authors: bitbol af. PLoS Comput Biol. 2024 Sep 6;20(9):e1012424. doi: 10.1371/journal.pcbi.1012424. eCollection 2024 Sep. PLoS Comput Biol. 2024. PMID: 39241045 Free PMC article.

5

Frequent asymmetric migrations suppress natural selection in spatially structured populations.

Abbara A, Bitbol AF. Abbara A, et al. Among authors: bitbol af. PNAS Nexus. 2023 Nov 14;2(11):pgad392. doi: 10.1093/pnasnexus/pgad392. eCollection 2023 Nov. PNAS Nexus. 2023. PMID: 38024415 Free PMC article.

6

A convolutional neural network segments yeast microscopy images with high accuracy.

Dietler N, Minder M, Gligorovski V, Economou AM, Joly DAHL, Sadeghi A, Chan CHM, Koziński M, Weigert M, Bitbol AF, Rahi SJ. Dietler N, et al. Among authors: bitbol af. Nat Commun. 2020 Nov 12;11(1):5723. doi: 10.1038/s41467-020-19557-4. Nat Commun. 2020. PMID: 33184262 Free PMC article.

7

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.

Gandarilla-Pérez CA, Pinilla S, Bitbol AF, Weigt M. Gandarilla-Pérez CA, et al. Among authors: bitbol af. PLoS Comput Biol. 2023 Mar 30;19(3):e1011010. doi: 10.1371/journal.pcbi.1011010. eCollection 2023 Mar. PLoS Comput Biol. 2023. PMID: 36996234 Free PMC article.

8

Generative power of a protein language model trained on multiple sequence alignments.

Sgarbossa D, Lupo U, Bitbol AF. Sgarbossa D, et al. Among authors: bitbol af. Elife. 2023 Feb 3;12:e79854. doi: 10.7554/eLife.79854. Elife. 2023. PMID: 36734516 Free PMC article.

9

Protein language models trained on multiple sequence alignments learn phylogenetic relationships.

Lupo U, Sgarbossa D, Bitbol AF. Lupo U, et al. Among authors: bitbol af. Nat Commun. 2022 Oct 22;13(1):6298. doi: 10.1038/s41467-022-34032-y. Nat Commun. 2022. PMID: 36273003 Free PMC article.

10

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals.

Colavin A, Atolia E, Bitbol AF, Huang KC. Colavin A, et al. Among authors: bitbol af. Sci Rep. 2022 Jan 17;12(1):820. doi: 10.1038/s41598-021-04260-1. Sci Rep. 2022. PMID: 35039514 Free PMC article.

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