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Page 1
The T cell receptor β chain repertoire of tumor infiltrating lymphocytes improves neoantigen prediction and prioritization.
Pham TMQ, Nguyen TN, Tran Nguyen BQ, Diem Tran TP, Diem Pham NM, Phuc Nguyen HT, Cuong Ho TK, Linh Nguyen DV, Nguyen HT, Tran DH, Tran TS, Pham TVN, Le MT, Vy Nguyen TT, Phan MD, Giang H, Nguyen HN, Tran LS. Pham TMQ, et al. Among authors: phan md. Elife. 2024 Oct 28;13:RP94658. doi: 10.7554/eLife.94658. Elife. 2024. PMID: 39466298 Free PMC article.
Multimodal analysis of methylomics and fragmentomics in plasma cell-free DNA for multi-cancer early detection and localization.
Nguyen VTC, Nguyen TH, Doan NNT, Pham TMQ, Nguyen GTH, Nguyen TD, Tran TTT, Vo DL, Phan TH, Jasmine TX, Nguyen VC, Nguyen HT, Nguyen TV, Nguyen THH, Huynh LAK, Tran TH, Dang QT, Doan TN, Tran AM, Nguyen VH, Nguyen VTA, Ho LMQ, Tran QD, Pham TTT, Ho TD, Nguyen BT, Nguyen TNV, Nguyen TD, Phu DTB, Phan BHH, Vo TL, Nai THT, Tran TT, Truong MH, Tran NC, Le TK, Tran THT, Duong ML, Bach HPT, Kim VV, Pham TA, Tran DH, Le TNA, Pham TVN, Le MT, Vo DH, Tran TMT, Nguyen MN, Van TTV, Nguyen AN, Tran TT, Tran VU, Le MP, Do TT, Phan TV, Nguyen HL, Nguyen DS, Cao VT, Do TT, Truong DK, Tang HS, Giang H, Nguyen HN, Phan MD, Tran LS. Nguyen VTC, et al. Among authors: phan th, phan tv, phan bhh, phan md. Elife. 2023 Oct 11;12:RP89083. doi: 10.7554/eLife.89083. Elife. 2023. PMID: 37819044 Free PMC article.
Multimodal analysis of ctDNA methylation and fragmentomic profiles enhances detection of nonmetastatic colorectal cancer.
Nguyen HT, Khoa Huynh LA, Nguyen TV, Tran DH, Thu Tran TT, Khang Le ND, Le NT, Pham TN, Le MT, Quynh Pham TM, Nguyen TH, Van Nguyen TC, Nguyen TD, Tran Nguyen BQ, Phan MD, Giang H, Tran LS. Nguyen HT, et al. Among authors: phan md. Future Oncol. 2022 Nov;18(35):3895-3912. doi: 10.2217/fon-2022-1041. Epub 2022 Dec 16. Future Oncol. 2022. PMID: 36524960
epiTCR: a highly sensitive predictor for TCR-peptide binding.
Pham MN, Nguyen TN, Tran LS, Nguyen QB, Nguyen TH, Pham TMQ, Nguyen HN, Giang H, Phan MD, Nguyen V. Pham MN, et al. Among authors: phan md. Bioinformatics. 2023 May 4;39(5):btad284. doi: 10.1093/bioinformatics/btad284. Bioinformatics. 2023. PMID: 37094220 Free PMC article.
Tissue of origin detection for cancer tumor using low-depth cfDNA samples through combination of tumor-specific methylation atlas and genome-wide methylation density in graph convolutional neural networks.
Nguyen TH, Doan NNT, Tran TH, Huynh LAK, Doan PL, Nguyen THH, Nguyen VTC, Nguyen GTH, Nguyen HN, Giang H, Tran LS, Phan MD. Nguyen TH, et al. Among authors: phan md. J Transl Med. 2024 Jul 3;22(1):618. doi: 10.1186/s12967-024-05416-z. J Transl Med. 2024. PMID: 38961476 Free PMC article.
Circulating DNA methylation profile improves the accuracy of serum biomarkers for the detection of nonmetastatic hepatocellular carcinoma.
Phan TH, Chi Nguyen VT, Thi Pham TT, Nguyen VC, Ho TD, Quynh Pham TM, Tran TH, Nguyen TD, Khang Le ND, Nguyen TH, Duong ML, Bach HT, Kim VV, Pham TA, Nguyen BT, Vo Nguyen TN, Nguyen TD, Bieu Phu DT, Huu Phan BH, Nguyen DS, Truong DK, Do TT, Giang H, Nguyen HN, Phan MD, Tran LS. Phan TH, et al. Among authors: phan md. Future Oncol. 2022 Dec;18(39):4399-4413. doi: 10.2217/fon-2022-1218. Epub 2023 Feb 14. Future Oncol. 2022. PMID: 36786635
Multimodal analysis of genome-wide methylation, copy number aberrations, and end motif signatures enhances detection of early-stage breast cancer.
Pham TMQ, Phan TH, Jasmine TX, Tran TTT, Huynh LAK, Vo TL, Nai THT, Tran TT, Truong MH, Tran NC, Nguyen VTC, Nguyen TH, Nguyen THH, Le NDK, Nguyen TD, Nguyen DS, Truong DK, Do TTT, Phan MD, Giang H, Nguyen HN, Tran LS. Pham TMQ, et al. Among authors: phan th, phan md. Front Oncol. 2023 May 8;13:1127086. doi: 10.3389/fonc.2023.1127086. eCollection 2023. Front Oncol. 2023. PMID: 37223690 Free PMC article.
Fragment length profiles of cancer mutations enhance detection of circulating tumor DNA in patients with early-stage hepatocellular carcinoma.
Nguyen VC, Nguyen TH, Phan TH, Tran TT, Pham TTT, Ho TD, Nguyen HHT, Duong ML, Nguyen CM, Nguyen QB, Bach HT, Kim VV, Pham TA, Nguyen BT, Nguyen TNV, Huynh LAK, Tran VU, Tran TTT, Nguyen TD, Phu DTB, Phan BHH, Nguyen QT, Truong DK, Do TT, Nguyen HN, Phan MD, Giang H, Tran LS. Nguyen VC, et al. Among authors: phan th, phan bhh, phan md. BMC Cancer. 2023 Mar 13;23(1):233. doi: 10.1186/s12885-023-10681-0. BMC Cancer. 2023. PMID: 36915069 Free PMC article.
Genetic landscape and personalized tracking of tumor mutations in Vietnamese women with breast cancer.
Nguyen Hoang VA, Nguyen ST, Nguyen TV, Pham TH, Doan PL, Nguyen Thi NT, Nguyen ML, Dinh TC, Pham DH, Nguyen NM, Nguyen DS, Nguyen DQ, Lu YT, Do TTT, Truong DK, Phan MD, Nguyen HN, Giang H, Tu LN. Nguyen Hoang VA, et al. Among authors: phan md. Mol Oncol. 2023 Apr;17(4):598-610. doi: 10.1002/1878-0261.13356. Epub 2023 Jan 15. Mol Oncol. 2023. PMID: 36495126 Free PMC article.
133 results