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Page 1
Overcoming Data Bottlenecks in Genomic Pathogen Surveillance.
Afolayan AO, Bernal JF, Gayeta JM, Masim ML, Shamanna V, Abrudan M, Abudahab K, Argimón S, Carlos CC, Sia S, Ravikumar KL, Okeke IN, Donado-Godoy P, Aanensen DM, Underwood A; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Afolayan AO, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S267-S274. doi: 10.1093/cid/ciab785. Clin Infect Dis. 2021. PMID: 34850839 Free PMC article.
Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014.
Lagrada ML, Argimón S, Borlasa JB, Abad JP, Gayeta JM, Masim ML, Olorosa AM, Cohen V, Jeffrey B, Abudahab K, Sia SB, Hufano CM, Stelling J, Holden MTG, Aanensen DM, Carlos CC. Lagrada ML, et al. Trans R Soc Trop Med Hyg. 2022 Dec 2;116(12):1202-1213. doi: 10.1093/trstmh/trac080. Trans R Soc Trop Med Hyg. 2022. PMID: 35999186 Free PMC article.
Clones and Clusters of Antimicrobial-Resistant Klebsiella From Southwestern Nigeria.
Afolayan AO, Oaikhena AO, Aboderin AO, Olabisi OF, Amupitan AA, Abiri OV, Ogunleye VO, Odih EE, Adeyemo AT, Adeyemo AT, Obadare TO, Abrudan M, Argimón S, David S, Kekre M, Underwood A, Egwuenu A, Ihekweazu C, Aanensen DM, Okeke IN; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Afolayan AO, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S308-S315. doi: 10.1093/cid/ciab769. Clin Infect Dis. 2021. PMID: 34850837 Free PMC article.
Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance.
Kekre M, Arevalo SA, Valencia MF, Lagrada ML, Macaranas PKV, Nagaraj G, Oaikhena AO, Olorosa AM, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Kekre M, et al. Among authors: lagrada ml. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S258-S266. doi: 10.1093/cid/ciab796. Clin Infect Dis. 2021. PMID: 34850836 Free PMC article.
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Argimón S, David S, Underwood A, Abrudan M, Wheeler NE, Kekre M, Abudahab K, Yeats CA, Goater R, Taylor B, Harste H, Muddyman D, Feil EJ, Brisse S, Holt K, Donado-Godoy P, Ravikumar KL, Okeke IN, Carlos C, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Argimón S, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S325-S335. doi: 10.1093/cid/ciab784. Clin Infect Dis. 2021. PMID: 34850838 Free PMC article.
Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014.
Jamoralin MC Jr, Argimón S, Lagrada ML, Villamin AS, Masim ML, Gayeta JM, Boehme KD, Olorosa AM, Sia SB, Hufano CM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Stelling J, Holden MTG, Aanensenb DM; e,*; Carlosa CC; Philippines Antimicrobial Resistance Surveillance Program. Jamoralin MC Jr, et al. Among authors: lagrada ml. Western Pac Surveill Response J. 2021 Feb 26;12(1):17-25. doi: 10.5365/wpsar.2020.11.1.005. eCollection 2021 Jan-Mar. Western Pac Surveill Response J. 2021. PMID: 34094619 Free PMC article.
Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013-2014.
Chilam J, Argimón S, Limas MT, Masim ML, Gayeta JM, Lagrada ML, Olorosa AM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC; Philippines Antimicrobial Resistance Surveillance Program. Chilam J, et al. Among authors: lagrada ml. Western Pac Surveill Response J. 2021 Oct 27;12(4):1-15. doi: 10.5365/wpsar.2021.12.4.863. eCollection 2021 Oct-Dec. Western Pac Surveill Response J. 2021. PMID: 35251744 Free PMC article.
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014.
Chilam J, Argimón S, Limas MT, Masim ML, Gayeta JM, Lagrada ML, Olorosa AM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC; Philippines Antimicrobial Resistance Surveillance Program. Chilam J, et al. Among authors: lagrada ml. Western Pac Surveill Response J. 2021 Apr 28;12(2):4-18. doi: 10.5365/wpsar.2020.11.1.006. eCollection 2021 Apr-Jun. Western Pac Surveill Response J. 2021. PMID: 34540307 Free PMC article.
Genomic surveillance of methicillin-resistant Staphylococcus aureus in the Philippines, 
2013-2014.
Masim ML, Argimón S, Espiritu HO, Magbanua MA, Lagrada ML, Olorosa AM, Cohen V, Gayeta JM, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC; Philippines Antimicrobial Resistance Surveillance Program. Masim ML, et al. Among authors: lagrada ml. Western Pac Surveill Response J. 2021 Feb 26;12(1):6-16. doi: 10.5365/wpsar.2020.11.1.004. eCollection 2021 Jan-Mar. Western Pac Surveill Response J. 2021. PMID: 34094618 Free PMC article.
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