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Population structure and antimicrobial resistance among Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health study.
Calland JK, Haukka K, Kpordze SW, Brusah A, Corbella M, Merla C, Samuelsen Ø, Feil EJ, Sassera D, Karikari AB, Saba CKS, Thorpe HA, Corander J. Calland JK, et al. Lancet Microbe. 2023 Nov;4(11):e943-e952. doi: 10.1016/S2666-5247(23)00208-2. Epub 2023 Oct 16. Lancet Microbe. 2023. PMID: 37858320 Free article.
High-resolution sweep metagenomics using fast probabilistic inference.
Mäklin T, Kallonen T, David S, Boinett CJ, Pascoe B, Méric G, Aanensen DM, Feil EJ, Baker S, Parkhill J, Sheppard SK, Corander J, Honkela A. Mäklin T, et al. Wellcome Open Res. 2021 Oct 8;5:14. doi: 10.12688/wellcomeopenres.15639.2. eCollection 2020. Wellcome Open Res. 2021. PMID: 34746439 Free PMC article.
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Argimón S, David S, Underwood A, Abrudan M, Wheeler NE, Kekre M, Abudahab K, Yeats CA, Goater R, Taylor B, Harste H, Muddyman D, Feil EJ, Brisse S, Holt K, Donado-Godoy P, Ravikumar KL, Okeke IN, Carlos C, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Argimón S, et al. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S325-S335. doi: 10.1093/cid/ciab784. Clin Infect Dis. 2021. PMID: 34850838 Free PMC article.
A high prevalence of blaOXA-48 in Klebsiella (Raoultella) ornithinolytica and related species in hospital wastewater in South West England.
Gibbon MJ, Couto N, David S, Barden R, Standerwick R, Jagadeesan K, Birkwood H, Dulyayangkul P, Avison MB, Kannan A, Kibbey D, Craft T, Habib S, Thorpe HA, Corander J, Kasprzyk-Hordern B, Feil EJ. Gibbon MJ, et al. Microb Genom. 2021 Mar;7(3):mgen000509. doi: 10.1099/mgen.0.000509. Epub 2021 Jan 8. Microb Genom. 2021. PMID: 33416467 Free PMC article.
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