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Page 1
Protein networks in disease.
Ideker T, Sharan R. Ideker T, et al. Genome Res. 2008 Apr;18(4):644-52. doi: 10.1101/gr.071852.107. Genome Res. 2008. PMID: 18381899 Free PMC article. Review.
A human MAP kinase interactome.
Bandyopadhyay S, Chiang CY, Srivastava J, Gersten M, White S, Bell R, Kurschner C, Martin C, Smoot M, Sahasrabudhe S, Barber DL, Chanda SK, Ideker T. Bandyopadhyay S, et al. Nat Methods. 2010 Oct;7(10):801-5. doi: 10.1038/nmeth.1506. Nat Methods. 2010. PMID: 20936779 Free PMC article.
Evolutionarily conserved herpesviral protein interaction networks.
Fossum E, Friedel CC, Rajagopala SV, Titz B, Baiker A, Schmidt T, Kraus T, Stellberger T, Rutenberg C, Suthram S, Bandyopadhyay S, Rose D, von Brunn A, Uhlmann M, Zeretzke C, Dong YA, Boulet H, Koegl M, Bailer SM, Koszinowski U, Ideker T, Uetz P, Zimmer R, Haas J. Fossum E, et al. PLoS Pathog. 2009 Sep;5(9):e1000570. doi: 10.1371/journal.ppat.1000570. Epub 2009 Sep 4. PLoS Pathog. 2009. PMID: 19730696 Free PMC article.
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
Cost-effective strategies for completing the interactome.
Schwartz AS, Yu J, Gardenour KR, Finley RL Jr, Ideker T. Schwartz AS, et al. Nat Methods. 2009 Jan;6(1):55-61. doi: 10.1038/nmeth.1283. Epub 2008 Dec 14. Nat Methods. 2009. PMID: 19079254 Free PMC article.
A systems approach to mapping DNA damage response pathways.
Workman CT, Mak HC, McCuine S, Tagne JB, Agarwal M, Ozier O, Begley TJ, Samson LD, Ideker T. Workman CT, et al. Science. 2006 May 19;312(5776):1054-9. doi: 10.1126/science.1122088. Science. 2006. PMID: 16709784 Free PMC article.
12 results