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Signaling hypergraphs.
Ritz A, Tegge AN, Kim H, Poirel CL, Murali TM. Ritz A, et al. Trends Biotechnol. 2014 Jul;32(7):356-62. doi: 10.1016/j.tibtech.2014.04.007. Epub 2014 May 22. Trends Biotechnol. 2014. PMID: 24857424 Free PMC article.
Pathway Analysis with Signaling Hypergraphs.
Ritz A, Avent B, Murali TM. Ritz A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2017 Sep-Oct;14(5):1042-1055. doi: 10.1109/TCBB.2015.2459681. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 28991726 Free PMC article.
Network-based functional enrichment.
Poirel CL, Owens CC 3rd, Murali TM. Poirel CL, et al. BMC Bioinformatics. 2011;12 Suppl 13(Suppl 13):S14. doi: 10.1186/1471-2105-12-s13-s14. Epub 2011 Nov 30. BMC Bioinformatics. 2011. PMID: 22479706 Free PMC article.
XTalkDB: a database of signaling pathway crosstalk.
Sam SA, Teel J, Tegge AN, Bharadwaj A, Murali TM. Sam SA, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D432-D439. doi: 10.1093/nar/gkw1037. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899583 Free PMC article.
23 results