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How local reference panels improve imputation in French populations.
Herzig AF, Velo-Suárez L; FrEx Consortium; FranceGenRef Consortium; Dina C, Redon R, Deleuze JF, Génin E. Herzig AF, et al. Sci Rep. 2024 Jan 3;14(1):370. doi: 10.1038/s41598-023-49931-3. Sci Rep. 2024. PMID: 38172507 Free PMC article.
Heterogeneity of SARS-CoV-2 virus produced in cell culture revealed by shotgun proteomics and supported by genome sequencing.
Gallais F, Pible O, Gaillard JC, Debroas S, Batina H, Ruat S, Sandron F, Delafoy D, Gerber Z, Olaso R, Gas F, Bellanger L, Deleuze JF, Grenga L, Armengaud J. Gallais F, et al. Among authors: delafoy d. Anal Bioanal Chem. 2021 Dec;413(29):7265-7275. doi: 10.1007/s00216-021-03401-9. Epub 2021 May 20. Anal Bioanal Chem. 2021. PMID: 34013402 Free PMC article.
Definition of a concentration and RNA extraction protocol for optimal whole genome sequencing of SARS-CoV-2 in wastewater (ANRS0160).
Chaqroun A, El Soufi G, Gerber Z, Loutreul J, Cluzel N, Delafoy D, Sandron F, Di Jorio L, Raffestin S, Maréchal V, Gantzer C, Olaso R, Deleuze JF, Rohr O, Boudaud N, Wallet C, Bertrand I. Chaqroun A, et al. Among authors: delafoy d. Sci Total Environ. 2024 Nov 20;952:175823. doi: 10.1016/j.scitotenv.2024.175823. Epub 2024 Aug 26. Sci Total Environ. 2024. PMID: 39197764 Free article.
Highly efficient and sensitive membrane-based concentration process allows quantification, surveillance, and sequencing of viruses in large volumes of wastewater.
El Soufi G, Di Jorio L, Gerber Z, Cluzel N, Van Assche J, Delafoy D, Olaso R, Daviaud C, Loustau T, Schwartz C, Trebouet D, Hernalsteens O, Marechal V, Raffestin S, Rousset D, Van Lint C, Deleuze JF, Boni M; OBEPINE consortium; Rohr O, Villain-Gambier M, Wallet C. El Soufi G, et al. Among authors: delafoy d. Water Res. 2024 Feb 1;249:120959. doi: 10.1016/j.watres.2023.120959. Epub 2023 Dec 3. Water Res. 2024. PMID: 38070350 Free article.